Variant report

Variant	rs6461857
Chromosome Location	chr7:25340125-25340126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6461858	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948208	0.90[EUR][1000 genomes]
rs721316	0.92[EUR][1000 genomes]
rs7799787	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs916847	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs916848	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3505578	chr7:25338027-25343225	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3505576	chr7:25338477-25343275	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3505573	chr7:25339081-25342246	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3505575	chr7:25339097-25342219	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3505577	chr7:25339180-25342132	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3505579	chr7:25339184-25342130	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25336800-25342400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:25336800-25342400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:25336800-25342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:25336800-25342600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:25337000-25342400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:25337400-25342600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:25339200-25342600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:25339400-25342400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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