Variant report

Variant	rs6461858
Chromosome Location	chr7:25343501-25343502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6461857	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948208	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs721316	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7799787	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs916848	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain
2	chr7:25342200-25343600	Enhancers	Lung	lung
3	chr7:25342400-25344200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:25342400-25344600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:25342400-25344600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:25342600-25343600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:25342600-25343800	Enhancers	Colon Smooth Muscle	Colon
8	chr7:25342600-25344600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:25342600-25344600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:25342600-25344600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:25342600-25344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:25342600-25344800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:25342600-25345000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:25342800-25343600	Enhancers	Right Ventricle	heart
15	chr7:25342800-25343800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:25342800-25343800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:25342800-25343800	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:25342800-25344000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:25342800-25344400	Enhancers	Brain Germinal Matrix	brain
20	chr7:25342800-25344800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr7:25343000-25343600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:25343000-25343600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:25343000-25343600	Enhancers	Aorta	Aorta
24	chr7:25343000-25343600	Enhancers	Fetal Kidney	kidney
25	chr7:25343000-25343600	Enhancers	Left Ventricle	heart
26	chr7:25343000-25343600	Enhancers	Ovary	ovary
27	chr7:25343000-25343600	Enhancers	Psoas Muscle	Psoas
28	chr7:25343000-25343600	Enhancers	Spleen	Spleen
29	chr7:25343000-25343800	Enhancers	HSMMtube	muscle
30	chr7:25343000-25344800	Enhancers	Fetal Muscle Leg	muscle
31	chr7:25343000-25345000	Enhancers	Fetal Stomach	stomach
32	chr7:25343200-25343600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:25343200-25343600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr7:25343200-25343800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:25343200-25344400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:25343200-25344400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:25343200-25344800	Enhancers	Fetal Intestine Small	intestine
38	chr7:25343200-25344800	Enhancers	Fetal Lung	lung
39	chr7:25343200-25347000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:25343200-25347600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:25343200-25348000	Weak transcription	Pancreas	Pancrea
42	chr7:25343400-25343600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:25343400-25343600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr7:25343400-25343600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr7:25343400-25343600	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr7:25343400-25343800	Flanking Active TSS	Fetal Heart	heart
47	chr7:25343400-25343800	Enhancers	NH-A	brain
48	chr7:25343400-25344400	Weak transcription	Fetal Intestine Large	intestine
49	chr7:25343400-25344400	Weak transcription	Right Atrium	heart
50	chr7:25343400-25344600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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