Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10245418	0.94[JPT][hapmap]
rs10252552	1.00[JPT][hapmap]
rs10259674	1.00[JPT][hapmap]
rs10267370	1.00[JPT][hapmap]
rs10276929	1.00[JPT][hapmap]
rs10486527	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11981364	0.82[EUR][1000 genomes]
rs11982012	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12666595	1.00[JPT][hapmap]
rs12666901	1.00[JPT][hapmap]
rs12668060	1.00[JPT][hapmap]
rs12669656	1.00[JPT][hapmap]
rs12670789	1.00[JPT][hapmap]
rs12672071	1.00[JPT][hapmap]
rs12672496	1.00[JPT][hapmap]
rs12673004	1.00[JPT][hapmap]
rs17170181	0.82[JPT][hapmap]
rs17170255	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3779240	1.00[JPT][hapmap]
rs6969260	1.00[JPT][hapmap]
rs6974593	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
6	chr7:33375200-33380600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:33377200-33378400	Weak transcription	NHDF-Ad	bronchial
9	chr7:33377400-33384600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
11	chr7:33377800-33392600	Weak transcription	Primary B cells from peripheral blood	blood

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