Variant report

Variant	rs11982012
Chromosome Location	chr7:33377472-33377473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1019301	0.89[ASN][1000 genomes]
rs10235126	0.82[ASN][1000 genomes]
rs10250448	1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[ASN][1000 genomes]
rs1029852	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10486523	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10486525	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10486527	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981364	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154760	1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[ASN][1000 genomes]
rs12155389	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs1362370	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16879114	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17169807	1.00[CHB][hapmap]
rs17170099	1.00[CHB][hapmap]
rs17170104	1.00[CHB][hapmap]
rs17170105	1.00[CHB][hapmap]
rs17170120	0.89[ASN][1000 genomes]
rs17170131	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170138	0.89[ASN][1000 genomes]
rs17170140	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170143	0.89[ASN][1000 genomes]
rs17170155	0.89[ASN][1000 genomes]
rs17170167	0.91[ASN][1000 genomes]
rs17170169	0.91[ASN][1000 genomes]
rs17170173	0.91[ASN][1000 genomes]
rs17170178	0.91[ASN][1000 genomes]
rs17170189	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs17170204	1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[ASN][1000 genomes]
rs17170212	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17170217	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[ASN][1000 genomes]
rs17170219	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs17170232	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs17170243	1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[ASN][1000 genomes]
rs17170252	0.96[ASN][1000 genomes]
rs1833176	0.91[ASN][1000 genomes]
rs1860601	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.98[ASN][1000 genomes]
rs34950347	0.89[ASN][1000 genomes]
rs3828996	1.00[CHB][hapmap]
rs4538777	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4628178	0.89[ASN][1000 genomes]
rs55744824	0.96[ASN][1000 genomes]
rs55829345	0.85[ASN][1000 genomes]
rs55865959	0.89[ASN][1000 genomes]
rs55924837	0.87[ASN][1000 genomes]
rs55934422	0.87[ASN][1000 genomes]
rs56076132	0.85[ASN][1000 genomes]
rs56205706	0.98[ASN][1000 genomes]
rs56343904	0.91[ASN][1000 genomes]
rs57302264	0.87[ASN][1000 genomes]
rs58365873	1.00[ASN][1000 genomes]
rs58435944	0.98[ASN][1000 genomes]
rs59075362	0.89[ASN][1000 genomes]
rs59139609	0.85[ASN][1000 genomes]
rs59497572	0.98[ASN][1000 genomes]
rs59674649	0.98[ASN][1000 genomes]
rs60146993	0.85[ASN][1000 genomes]
rs60268357	0.89[ASN][1000 genomes]
rs60491621	0.83[ASN][1000 genomes]
rs60871858	0.85[ASN][1000 genomes]
rs61312218	0.98[ASN][1000 genomes]
rs61517720	0.98[ASN][1000 genomes]
rs6462469	0.98[ASN][1000 genomes]
rs6462471	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6462474	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[ASN][1000 genomes]
rs6943198	0.84[CHB][hapmap]
rs6944559	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6944642	0.98[ASN][1000 genomes]
rs6945490	0.91[ASN][1000 genomes]
rs6951724	0.98[ASN][1000 genomes]
rs6952244	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6955294	0.98[ASN][1000 genomes]
rs6955645	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[ASN][1000 genomes]
rs6961060	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs6962911	0.98[ASN][1000 genomes]
rs6969284	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6973114	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6973552	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6975464	0.98[ASN][1000 genomes]
rs72496118	0.87[ASN][1000 genomes]
rs73307386	0.89[ASN][1000 genomes]
rs73307398	0.89[ASN][1000 genomes]
rs73307399	0.89[ASN][1000 genomes]
rs73307400	0.89[ASN][1000 genomes]
rs73309308	0.89[ASN][1000 genomes]
rs73309310	0.89[ASN][1000 genomes]
rs73309312	0.85[ASN][1000 genomes]
rs73309316	0.89[ASN][1000 genomes]
rs73309318	0.89[ASN][1000 genomes]
rs73309324	0.89[ASN][1000 genomes]
rs73309326	0.89[ASN][1000 genomes]
rs73309328	0.89[ASN][1000 genomes]
rs73313121	0.91[ASN][1000 genomes]
rs73313134	0.91[ASN][1000 genomes]
rs73313138	0.91[ASN][1000 genomes]
rs73313140	0.98[ASN][1000 genomes]
rs73313148	0.98[ASN][1000 genomes]
rs73313150	0.98[ASN][1000 genomes]
rs73313177	1.00[ASN][1000 genomes]
rs73313187	1.00[ASN][1000 genomes]
rs73313190	1.00[ASN][1000 genomes]
rs73313195	1.00[ASN][1000 genomes]
rs73313199	1.00[ASN][1000 genomes]
rs73314906	0.91[ASN][1000 genomes]
rs73314908	0.91[ASN][1000 genomes]
rs73314910	0.96[ASN][1000 genomes]
rs73314915	0.96[ASN][1000 genomes]
rs73317008	0.96[ASN][1000 genomes]
rs73317017	0.96[ASN][1000 genomes]
rs73317065	0.85[ASN][1000 genomes]
rs73317078	0.87[ASN][1000 genomes]
rs73688093	0.89[ASN][1000 genomes]
rs73689881	0.89[ASN][1000 genomes]
rs7779777	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7790483	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7793667	0.89[ASN][1000 genomes]
rs7795704	1.00[CHB][hapmap]
rs7798118	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs7799346	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7805883	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7806348	1.00[ASN][1000 genomes]
rs7808472	0.89[ASN][1000 genomes]
rs7809235	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7809366	0.85[ASN][1000 genomes]
rs9785048	1.00[ASN][1000 genomes]
rs9791555	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9791901	0.84[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
6	chr7:33375200-33380600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:33377200-33378400	Weak transcription	NHDF-Ad	bronchial
9	chr7:33377400-33384600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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