Variant report

Variant	rs55744824
Chromosome Location	chr7:33459716-33459717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1019301	0.85[ASN][1000 genomes]
rs10235126	0.82[ASN][1000 genomes]
rs10250448	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1029852	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10486525	0.85[ASN][1000 genomes]
rs10486527	0.96[ASN][1000 genomes]
rs11981364	0.96[ASN][1000 genomes]
rs11982012	0.96[ASN][1000 genomes]
rs12154760	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155389	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1362370	0.85[ASN][1000 genomes]
rs16879114	0.81[ASN][1000 genomes]
rs17170120	0.85[ASN][1000 genomes]
rs17170131	0.85[ASN][1000 genomes]
rs17170138	0.85[ASN][1000 genomes]
rs17170140	0.85[ASN][1000 genomes]
rs17170143	0.85[ASN][1000 genomes]
rs17170155	0.85[ASN][1000 genomes]
rs17170167	0.87[ASN][1000 genomes]
rs17170169	0.87[ASN][1000 genomes]
rs17170173	0.87[ASN][1000 genomes]
rs17170178	0.87[ASN][1000 genomes]
rs17170189	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170204	0.91[ASN][1000 genomes]
rs17170212	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170217	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170219	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170232	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170243	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17170252	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170255	0.80[AMR][1000 genomes]
rs1833176	0.87[ASN][1000 genomes]
rs1860601	0.98[ASN][1000 genomes]
rs34950347	0.85[ASN][1000 genomes]
rs4538777	0.85[ASN][1000 genomes]
rs4628178	0.85[ASN][1000 genomes]
rs55829345	0.81[ASN][1000 genomes]
rs55865959	0.85[ASN][1000 genomes]
rs55934422	0.83[ASN][1000 genomes]
rs56076132	0.81[ASN][1000 genomes]
rs56205706	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56343904	0.87[ASN][1000 genomes]
rs57302264	0.83[ASN][1000 genomes]
rs58365873	0.96[ASN][1000 genomes]
rs58435944	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59075362	0.85[ASN][1000 genomes]
rs59139609	0.85[ASN][1000 genomes]
rs59497572	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59674649	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60146993	0.81[ASN][1000 genomes]
rs60268357	0.85[ASN][1000 genomes]
rs60871858	0.81[ASN][1000 genomes]
rs61312218	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61517720	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462469	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462474	0.96[ASN][1000 genomes]
rs6944559	0.85[ASN][1000 genomes]
rs6944642	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951724	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6952244	0.85[ASN][1000 genomes]
rs6955294	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6955645	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6961060	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6962911	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6969284	0.85[ASN][1000 genomes]
rs6973552	0.85[ASN][1000 genomes]
rs6975464	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72496118	0.83[ASN][1000 genomes]
rs73307386	0.85[ASN][1000 genomes]
rs73307398	0.85[ASN][1000 genomes]
rs73307399	0.85[ASN][1000 genomes]
rs73307400	0.85[ASN][1000 genomes]
rs73309308	0.85[ASN][1000 genomes]
rs73309310	0.85[ASN][1000 genomes]
rs73309312	0.80[ASN][1000 genomes]
rs73309316	0.85[ASN][1000 genomes]
rs73309318	0.85[ASN][1000 genomes]
rs73309324	0.85[ASN][1000 genomes]
rs73309326	0.85[ASN][1000 genomes]
rs73309328	0.85[ASN][1000 genomes]
rs73313121	0.87[ASN][1000 genomes]
rs73313134	0.87[ASN][1000 genomes]
rs73313138	0.87[ASN][1000 genomes]
rs73313140	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313148	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313150	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313177	0.96[ASN][1000 genomes]
rs73313187	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73313190	0.96[ASN][1000 genomes]
rs73313195	0.96[ASN][1000 genomes]
rs73313199	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73314906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73314908	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73314910	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317008	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73317017	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73317065	0.85[ASN][1000 genomes]
rs73317078	0.87[ASN][1000 genomes]
rs73688093	0.85[ASN][1000 genomes]
rs73689881	0.85[ASN][1000 genomes]
rs7779777	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7790483	0.96[ASN][1000 genomes]
rs7793667	0.85[ASN][1000 genomes]
rs7798118	0.85[ASN][1000 genomes]
rs7799346	0.85[ASN][1000 genomes]
rs7805883	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7806348	0.96[ASN][1000 genomes]
rs7808472	0.85[ASN][1000 genomes]
rs7809235	0.81[ASN][1000 genomes]
rs7809366	0.81[ASN][1000 genomes]
rs9785048	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33454800-33476800	Weak transcription	Aorta	Aorta
2	chr7:33455200-33462600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:33458200-33461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:33458200-33462600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:33458200-33466400	Weak transcription	Esophagus	oesophagus
6	chr7:33458400-33462600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:33458400-33465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:33458400-33465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:33458800-33462600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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