Variant report

Variant	rs17170232
Chromosome Location	chr7:33472460-33472461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs1019301	0.87[ASN][1000 genomes]
rs10235126	0.84[ASN][1000 genomes]
rs10250448	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486525	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10486527	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs11981364	0.98[ASN][1000 genomes]
rs11982012	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs12154760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1362370	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17170120	0.87[ASN][1000 genomes]
rs17170131	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs17170138	0.87[ASN][1000 genomes]
rs17170140	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17170143	0.87[ASN][1000 genomes]
rs17170155	0.87[ASN][1000 genomes]
rs17170167	0.89[ASN][1000 genomes]
rs17170169	0.89[ASN][1000 genomes]
rs17170173	0.89[ASN][1000 genomes]
rs17170178	0.89[ASN][1000 genomes]
rs17170189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170204	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs17170212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170243	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170252	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170255	1.00[CEU][hapmap]
rs1833176	0.89[ASN][1000 genomes]
rs1860601	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34950347	0.87[ASN][1000 genomes]
rs4538777	0.87[ASN][1000 genomes]
rs4628178	0.90[CEU][hapmap];0.87[ASN][1000 genomes]
rs55744824	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55865959	0.87[ASN][1000 genomes]
rs55934422	0.85[ASN][1000 genomes]
rs56205706	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56343904	0.89[ASN][1000 genomes]
rs57302264	0.85[ASN][1000 genomes]
rs58365873	0.98[ASN][1000 genomes]
rs58435944	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59075362	0.87[ASN][1000 genomes]
rs59139609	0.87[ASN][1000 genomes]
rs59497572	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59674649	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60268357	0.87[ASN][1000 genomes]
rs61312218	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61517720	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6462469	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6462474	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs6944559	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6944642	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6945490	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6951724	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6952244	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6955294	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6961060	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6962911	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6969284	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6973552	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6975464	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72496118	0.85[ASN][1000 genomes]
rs73307386	0.87[ASN][1000 genomes]
rs73307398	0.87[ASN][1000 genomes]
rs73307399	0.87[ASN][1000 genomes]
rs73307400	0.87[ASN][1000 genomes]
rs73309308	0.87[ASN][1000 genomes]
rs73309310	0.87[ASN][1000 genomes]
rs73309312	0.82[ASN][1000 genomes]
rs73309316	0.87[ASN][1000 genomes]
rs73309318	0.87[ASN][1000 genomes]
rs73309324	0.87[ASN][1000 genomes]
rs73309326	0.87[ASN][1000 genomes]
rs73309328	0.87[ASN][1000 genomes]
rs73313121	0.89[ASN][1000 genomes]
rs73313134	0.89[ASN][1000 genomes]
rs73313138	0.89[ASN][1000 genomes]
rs73313140	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73313148	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73313150	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73313177	0.98[ASN][1000 genomes]
rs73313187	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313190	0.98[ASN][1000 genomes]
rs73313195	0.98[ASN][1000 genomes]
rs73313199	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73314906	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73314908	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73314910	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73314915	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73317008	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73317017	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73317065	0.87[ASN][1000 genomes]
rs73317078	0.89[ASN][1000 genomes]
rs73688093	0.87[ASN][1000 genomes]
rs73689881	0.87[ASN][1000 genomes]
rs7779777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7790483	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs7793667	0.87[ASN][1000 genomes]
rs7798118	0.90[CEU][hapmap];0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs7799346	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7805883	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7806348	0.98[ASN][1000 genomes]
rs7808472	0.87[ASN][1000 genomes]
rs9785048	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33454800-33476800	Weak transcription	Aorta	Aorta
2	chr7:33463000-33476800	Weak transcription	Psoas Muscle	Psoas
3	chr7:33465600-33472600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:33468400-33478600	Weak transcription	Pancreas	Pancrea
5	chr7:33472400-33473200	Enhancers	NHEK	skin
6	chr7:33472400-33473600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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