Variant report

Variant	rs7790483
Chromosome Location	chr7:33406616-33406617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1019301	0.89[ASN][1000 genomes]
rs10235126	0.82[ASN][1000 genomes]
rs10250448	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs1029852	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10486523	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10486525	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10486527	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11981364	1.00[ASN][1000 genomes]
rs11982012	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12154760	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs12155389	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs1362370	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs16879114	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs17170099	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17170104	1.00[CHB][hapmap]
rs17170105	1.00[CHB][hapmap]
rs17170120	0.89[ASN][1000 genomes]
rs17170131	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170138	0.89[ASN][1000 genomes]
rs17170140	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17170143	0.89[ASN][1000 genomes]
rs17170155	0.89[ASN][1000 genomes]
rs17170167	0.91[ASN][1000 genomes]
rs17170169	0.91[ASN][1000 genomes]
rs17170173	0.91[ASN][1000 genomes]
rs17170178	0.91[ASN][1000 genomes]
rs17170189	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs17170204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170212	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17170217	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17170219	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs17170232	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs17170243	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs17170252	0.96[ASN][1000 genomes]
rs17170255	0.80[CEU][hapmap]
rs1833176	0.91[ASN][1000 genomes]
rs1860601	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs34950347	0.89[ASN][1000 genomes]
rs4538777	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4628178	0.89[ASN][1000 genomes]
rs55744824	0.96[ASN][1000 genomes]
rs55829345	0.85[ASN][1000 genomes]
rs55865959	0.89[ASN][1000 genomes]
rs55924837	0.87[ASN][1000 genomes]
rs55934422	0.87[ASN][1000 genomes]
rs56076132	0.85[ASN][1000 genomes]
rs56205706	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56343904	0.91[ASN][1000 genomes]
rs57302264	0.87[ASN][1000 genomes]
rs58365873	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58435944	0.98[ASN][1000 genomes]
rs59075362	0.89[ASN][1000 genomes]
rs59139609	0.85[ASN][1000 genomes]
rs59497572	0.98[ASN][1000 genomes]
rs59674649	0.98[ASN][1000 genomes]
rs60146993	0.85[ASN][1000 genomes]
rs60268357	0.89[ASN][1000 genomes]
rs60491621	0.83[ASN][1000 genomes]
rs60871858	0.85[ASN][1000 genomes]
rs61312218	0.98[ASN][1000 genomes]
rs61517720	0.98[ASN][1000 genomes]
rs6462469	0.98[ASN][1000 genomes]
rs6462474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944559	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6944642	0.98[ASN][1000 genomes]
rs6945490	0.91[ASN][1000 genomes]
rs6951724	0.98[ASN][1000 genomes]
rs6952244	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6955294	0.98[ASN][1000 genomes]
rs6955645	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961060	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs6962911	0.98[ASN][1000 genomes]
rs6969284	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6973114	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6973552	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6975464	0.98[ASN][1000 genomes]
rs72496118	0.87[ASN][1000 genomes]
rs73307386	0.89[ASN][1000 genomes]
rs73307398	0.89[ASN][1000 genomes]
rs73307399	0.89[ASN][1000 genomes]
rs73307400	0.89[ASN][1000 genomes]
rs73309308	0.89[ASN][1000 genomes]
rs73309310	0.89[ASN][1000 genomes]
rs73309312	0.85[ASN][1000 genomes]
rs73309316	0.89[ASN][1000 genomes]
rs73309318	0.89[ASN][1000 genomes]
rs73309324	0.89[ASN][1000 genomes]
rs73309326	0.89[ASN][1000 genomes]
rs73309328	0.89[ASN][1000 genomes]
rs73313121	0.91[ASN][1000 genomes]
rs73313134	0.91[ASN][1000 genomes]
rs73313138	0.91[ASN][1000 genomes]
rs73313140	0.98[ASN][1000 genomes]
rs73313148	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313150	0.98[ASN][1000 genomes]
rs73313177	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313187	1.00[ASN][1000 genomes]
rs73313190	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313195	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313199	1.00[ASN][1000 genomes]
rs73314906	0.91[ASN][1000 genomes]
rs73314908	0.91[ASN][1000 genomes]
rs73314910	0.96[ASN][1000 genomes]
rs73314915	0.96[ASN][1000 genomes]
rs73317008	0.96[ASN][1000 genomes]
rs73317017	0.96[ASN][1000 genomes]
rs73317065	0.85[ASN][1000 genomes]
rs73317078	0.87[ASN][1000 genomes]
rs73688093	0.89[ASN][1000 genomes]
rs73689881	0.89[ASN][1000 genomes]
rs7779777	0.80[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7793667	0.89[ASN][1000 genomes]
rs7795704	1.00[CHB][hapmap]
rs7798118	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7799346	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7805883	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7806348	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808472	0.89[ASN][1000 genomes]
rs7809235	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7809366	0.85[ASN][1000 genomes]
rs9785048	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791555	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9791901	0.86[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:33389000-33437400	Weak transcription	Liver	Liver
9	chr7:33391600-33407400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:33393600-33419600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:33394200-33419400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:33394200-33419600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:33394400-33427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:33395000-33407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:33396600-33420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:33396600-33422000	Weak transcription	Small Intestine	intestine
18	chr7:33402600-33419600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:33403000-33427400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
21	chr7:33403800-33419600	Weak transcription	Brain Angular Gyrus	brain
22	chr7:33403800-33430400	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:33404000-33419800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:33404000-33433000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:33404200-33407400	Weak transcription	Fetal Brain Male	brain
26	chr7:33404600-33419600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:33404600-33419600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:33404800-33419600	Weak transcription	Right Ventricle	heart
29	chr7:33405000-33410800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:33405200-33415000	Weak transcription	Fetal Brain Female	brain
31	chr7:33405200-33420000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:33405200-33421600	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:33405400-33418400	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:33405400-33422200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:33405600-33407200	Weak transcription	Adipose Nuclei	Adipose
36	chr7:33405600-33409200	Weak transcription	Dnd41	blood
37	chr7:33405600-33419600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:33405600-33423600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:33405800-33415800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:33405800-33418400	Weak transcription	Aorta	Aorta
41	chr7:33405800-33419600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:33405800-33419600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:33406000-33409200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr7:33406000-33411000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:33406000-33418200	Weak transcription	Ovary	ovary
46	chr7:33406000-33419400	Weak transcription	Left Ventricle	heart
47	chr7:33406000-33419600	Weak transcription	Brain Anterior Caudate	brain
48	chr7:33406000-33419600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:33406000-33419600	Weak transcription	Fetal Stomach	stomach
50	chr7:33406000-33419800	Weak transcription	Fetal Lung	lung

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