Variant report

Variant	rs73317078
Chromosome Location	chr7:33532373-33532374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33528273..33530011-chr7:33531942..33534154,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10235126	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10250448	0.89[ASN][1000 genomes]
rs10262995	0.85[ASN][1000 genomes]
rs1029852	0.87[ASN][1000 genomes]
rs10486527	0.87[ASN][1000 genomes]
rs11981364	0.87[ASN][1000 genomes]
rs11982012	0.87[ASN][1000 genomes]
rs12154760	0.89[ASN][1000 genomes]
rs12155389	0.84[ASN][1000 genomes]
rs17170189	0.84[ASN][1000 genomes]
rs17170204	0.82[ASN][1000 genomes]
rs17170212	0.87[ASN][1000 genomes]
rs17170217	0.87[ASN][1000 genomes]
rs17170219	0.87[ASN][1000 genomes]
rs17170232	0.89[ASN][1000 genomes]
rs17170243	0.89[ASN][1000 genomes]
rs17170252	0.86[ASN][1000 genomes]
rs1860601	0.89[ASN][1000 genomes]
rs28619003	0.83[ASN][1000 genomes]
rs55744824	0.87[ASN][1000 genomes]
rs56205706	0.84[ASN][1000 genomes]
rs58365873	0.87[ASN][1000 genomes]
rs58435944	0.84[ASN][1000 genomes]
rs59139609	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59497572	0.84[ASN][1000 genomes]
rs59674649	0.84[ASN][1000 genomes]
rs61312218	0.84[ASN][1000 genomes]
rs61517720	0.84[ASN][1000 genomes]
rs6462469	0.84[ASN][1000 genomes]
rs6462474	0.87[ASN][1000 genomes]
rs6944642	0.84[ASN][1000 genomes]
rs6945490	0.82[ASN][1000 genomes]
rs6951724	0.84[ASN][1000 genomes]
rs6955294	0.84[ASN][1000 genomes]
rs6955645	0.87[ASN][1000 genomes]
rs6961060	0.86[ASN][1000 genomes]
rs6962911	0.84[ASN][1000 genomes]
rs6975464	0.89[ASN][1000 genomes]
rs73313140	0.84[ASN][1000 genomes]
rs73313148	0.84[ASN][1000 genomes]
rs73313150	0.84[ASN][1000 genomes]
rs73313177	0.87[ASN][1000 genomes]
rs73313187	0.87[ASN][1000 genomes]
rs73313190	0.87[ASN][1000 genomes]
rs73313195	0.87[ASN][1000 genomes]
rs73313199	0.87[ASN][1000 genomes]
rs73314906	0.82[ASN][1000 genomes]
rs73314908	0.82[ASN][1000 genomes]
rs73314910	0.87[ASN][1000 genomes]
rs73314915	0.87[ASN][1000 genomes]
rs73317008	0.86[ASN][1000 genomes]
rs73317017	0.86[ASN][1000 genomes]
rs73317065	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7779777	0.86[ASN][1000 genomes]
rs7790483	0.87[ASN][1000 genomes]
rs7805883	0.86[ASN][1000 genomes]
rs7806348	0.87[ASN][1000 genomes]
rs9785048	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:33520000-33534800	Weak transcription	Aorta	Aorta
3	chr7:33527400-33533600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:33527400-33534800	Weak transcription	Psoas Muscle	Psoas
5	chr7:33530200-33534800	Weak transcription	Left Ventricle	heart
6	chr7:33530400-33534400	Weak transcription	NH-A	brain
7	chr7:33530600-33535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:33530800-33535400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:33531400-33535800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:33531600-33535800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:33532000-33532400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr7:33532000-33532400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:33532000-33534800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:33532200-33532400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:33532200-33533000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:33532200-33533800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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