Variant report

Variant	rs6955645
Chromosome Location	chr7:33391139-33391140
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1019301	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10235126	0.82[ASN][1000 genomes]
rs10250448	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.98[ASN][1000 genomes]
rs10262995	0.82[YRI][hapmap]
rs10269945	0.84[AMR][1000 genomes]
rs10274959	0.84[AMR][1000 genomes]
rs1029852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486523	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10486525	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486527	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11981364	1.00[ASN][1000 genomes]
rs11982012	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[ASN][1000 genomes]
rs12154760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362370	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16879114	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17170099	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs17170104	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs17170105	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17170120	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17170131	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17170138	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170140	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170143	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170155	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170167	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170169	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170173	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170178	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170204	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170243	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.98[ASN][1000 genomes]
rs17170252	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170255	1.00[CEU][hapmap]
rs1833176	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1860601	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[ASN][1000 genomes]
rs34950347	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828996	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs4538777	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4628178	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55744824	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55829345	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55847945	0.84[AMR][1000 genomes]
rs55865959	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55924837	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55934422	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56076132	0.85[ASN][1000 genomes]
rs56205706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56343904	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57302264	0.87[ASN][1000 genomes]
rs58365873	1.00[ASN][1000 genomes]
rs58435944	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59075362	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59139609	0.85[ASN][1000 genomes]
rs59446325	0.84[AMR][1000 genomes]
rs59497572	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59674649	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60146993	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60268357	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60491621	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60871858	0.85[ASN][1000 genomes]
rs61312218	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61517720	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462469	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462474	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs6943198	0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes]
rs6944559	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6944642	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6945490	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6951724	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6952244	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6955294	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6961060	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6962911	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6969284	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6973114	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6973552	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6975464	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72496118	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73307386	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73307398	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73307399	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73307400	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73309308	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309310	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309312	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73309316	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309318	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309324	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309326	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73309328	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73313121	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313134	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313138	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313140	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313148	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313150	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313177	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313187	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313190	1.00[ASN][1000 genomes]
rs73313195	1.00[ASN][1000 genomes]
rs73313199	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314906	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73314908	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73314910	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73314915	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73317008	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73317017	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73317065	0.85[ASN][1000 genomes]
rs73317078	0.87[ASN][1000 genomes]
rs73317492	0.84[AMR][1000 genomes]
rs73319406	0.95[AMR][1000 genomes]
rs73319407	0.95[AMR][1000 genomes]
rs73319408	0.95[AMR][1000 genomes]
rs73688093	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73689881	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7779777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7781504	0.84[AMR][1000 genomes]
rs7790483	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793667	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7795704	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs7798118	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7799346	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7805883	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7806348	1.00[ASN][1000 genomes]
rs7808472	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7809235	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7809366	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9785048	1.00[ASN][1000 genomes]
rs9791555	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9791901	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose
5	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
7	chr7:33377800-33392600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:33378000-33392800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
10	chr7:33379600-33391800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:33380000-33404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:33380200-33393800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:33380400-33393200	Weak transcription	Primary B cells from cord blood	blood
14	chr7:33380400-33393400	Weak transcription	Fetal Stomach	stomach
15	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:33384200-33395800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:33386000-33394000	Weak transcription	Fetal Kidney	kidney
21	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:33386600-33393200	Weak transcription	Psoas Muscle	Psoas
24	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:33388800-33404800	Weak transcription	Lung	lung
26	chr7:33389000-33437400	Weak transcription	Liver	Liver
27	chr7:33390200-33391400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:33390200-33391600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:33390400-33391400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr7:33390400-33392800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:33390800-33394600	Weak transcription	Colon Smooth Muscle	Colon
32	chr7:33391000-33391200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:33391000-33391400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr7:33391000-33391600	Enhancers	HUES48 Cell Line	embryonic stem cell

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