Variant report

Variant	rs55829345
Chromosome Location	chr7:33250729-33250730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1019301	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10269945	0.91[EUR][1000 genomes]
rs10274959	0.91[EUR][1000 genomes]
rs1029852	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10486523	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486525	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10486527	0.85[ASN][1000 genomes]
rs11981364	0.85[ASN][1000 genomes]
rs11982012	0.85[ASN][1000 genomes]
rs12155389	0.87[ASN][1000 genomes]
rs1362370	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16879114	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169807	0.87[EUR][1000 genomes]
rs17169808	0.87[EUR][1000 genomes]
rs17170099	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170104	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170105	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170120	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170131	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170138	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170140	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170143	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170155	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17170167	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170169	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170173	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170178	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170189	0.87[ASN][1000 genomes]
rs17170204	0.80[ASN][1000 genomes]
rs17170212	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17170217	0.85[ASN][1000 genomes]
rs17170219	0.81[ASN][1000 genomes]
rs1833176	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2392229	0.87[EUR][1000 genomes]
rs34950347	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3750122	0.87[EUR][1000 genomes]
rs3828996	0.91[EUR][1000 genomes]
rs4538777	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4628178	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55744824	0.81[ASN][1000 genomes]
rs55847945	0.91[EUR][1000 genomes]
rs55865959	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55924837	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55934422	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56076132	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195645	0.87[EUR][1000 genomes]
rs56205706	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56343904	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57302264	0.89[ASN][1000 genomes]
rs58365873	0.85[ASN][1000 genomes]
rs58435944	0.87[ASN][1000 genomes]
rs58550767	0.91[EUR][1000 genomes]
rs59075362	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59446325	0.91[EUR][1000 genomes]
rs59497572	0.87[ASN][1000 genomes]
rs59674649	0.87[ASN][1000 genomes]
rs60146993	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60268357	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60491621	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60871858	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61312218	0.87[ASN][1000 genomes]
rs61517720	0.87[ASN][1000 genomes]
rs6462469	0.87[ASN][1000 genomes]
rs6462474	0.85[ASN][1000 genomes]
rs6943198	0.91[EUR][1000 genomes]
rs6944559	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6944642	0.87[ASN][1000 genomes]
rs6951724	0.87[ASN][1000 genomes]
rs6952244	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955294	0.87[ASN][1000 genomes]
rs6955645	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6962911	0.87[ASN][1000 genomes]
rs6964836	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6969284	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6973114	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6973552	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72496118	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73307386	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73307398	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73307399	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73307400	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73307592	0.87[EUR][1000 genomes]
rs73309308	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309310	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309312	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73309316	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309318	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309324	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309326	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309328	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309405	0.87[EUR][1000 genomes]
rs73309423	0.91[EUR][1000 genomes]
rs73313121	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313134	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313138	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73313140	0.87[ASN][1000 genomes]
rs73313148	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73313150	0.87[ASN][1000 genomes]
rs73313177	0.85[ASN][1000 genomes]
rs73313187	0.85[ASN][1000 genomes]
rs73313190	0.85[ASN][1000 genomes]
rs73313195	0.85[ASN][1000 genomes]
rs73313199	0.85[ASN][1000 genomes]
rs73314910	0.81[ASN][1000 genomes]
rs73314915	0.81[ASN][1000 genomes]
rs73317492	0.91[EUR][1000 genomes]
rs73319406	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73319407	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73319408	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73688093	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73689881	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7459365	0.87[EUR][1000 genomes]
rs7781504	0.91[EUR][1000 genomes]
rs7790483	0.85[ASN][1000 genomes]
rs7793667	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7795704	0.91[EUR][1000 genomes]
rs7798118	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7799346	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7806348	0.85[ASN][1000 genomes]
rs7808472	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809235	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809366	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809399	0.80[EUR][1000 genomes]
rs9785048	0.85[ASN][1000 genomes]
rs9791555	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791901	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
2	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
3	chr7:33247000-33252200	Weak transcription	Ovary	ovary
4	chr7:33248000-33255400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:33249200-33252600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:33249400-33257200	Weak transcription	Fetal Brain Male	brain
7	chr7:33249800-33250800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr7:33249800-33254600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:33250000-33250800	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr7:33250000-33251000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr7:33250000-33252400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr7:33250200-33251000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr7:33250200-33251800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:33250600-33251800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr7:33250600-33260400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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