Variant report

Variant	rs17170120
Chromosome Location	chr7:33263143-33263144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1019301	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269945	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10274959	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1029852	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10486523	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10486525	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486527	0.89[ASN][1000 genomes]
rs11981364	0.89[ASN][1000 genomes]
rs11982012	0.89[ASN][1000 genomes]
rs12154760	0.87[ASN][1000 genomes]
rs12155389	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1362370	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17169807	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17169808	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170099	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170104	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170105	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170140	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170167	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170169	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170173	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170178	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170189	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17170204	0.84[ASN][1000 genomes]
rs17170212	0.89[ASN][1000 genomes]
rs17170217	0.89[ASN][1000 genomes]
rs17170219	0.85[ASN][1000 genomes]
rs17170232	0.87[ASN][1000 genomes]
rs1833176	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2392229	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34950347	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750122	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3828996	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4538777	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744824	0.85[ASN][1000 genomes]
rs55829345	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55847945	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55865959	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55934422	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56076132	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56195645	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56205706	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56343904	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57302264	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58365873	0.89[ASN][1000 genomes]
rs58435944	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58550767	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59075362	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59446325	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59497572	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59674649	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60146993	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60268357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60491621	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60871858	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61312218	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61517720	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6462469	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6462474	0.89[ASN][1000 genomes]
rs6943198	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6944559	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944642	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6945490	0.80[ASN][1000 genomes]
rs6951724	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6952244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955294	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6955645	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6962911	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6964836	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6969284	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973552	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975464	0.87[ASN][1000 genomes]
rs72496118	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73307386	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307398	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307399	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73307400	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307592	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73309308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309310	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309312	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309318	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309326	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309328	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309405	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73309423	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73313121	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313134	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313138	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313140	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73313148	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73313150	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73313177	0.89[ASN][1000 genomes]
rs73313187	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73313190	0.89[ASN][1000 genomes]
rs73313195	0.89[ASN][1000 genomes]
rs73313199	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73314906	0.80[ASN][1000 genomes]
rs73314908	0.80[ASN][1000 genomes]
rs73314910	0.85[ASN][1000 genomes]
rs73314915	0.85[ASN][1000 genomes]
rs73317492	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73319406	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73319407	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73319408	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73688093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689881	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459365	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7781504	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7790483	0.89[ASN][1000 genomes]
rs7793667	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795704	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7796922	0.82[ASN][1000 genomes]
rs7798118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799346	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806348	0.89[ASN][1000 genomes]
rs7808472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809399	0.85[EUR][1000 genomes]
rs9785048	0.89[ASN][1000 genomes]
rs9791555	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9791901	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33251400-33265400	Weak transcription	Gastric	stomach
2	chr7:33252400-33263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:33252800-33266400	Weak transcription	Left Ventricle	heart
4	chr7:33253600-33263400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:33262200-33263200	Weak transcription	Ovary	ovary

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