Variant report

Variant	rs7799346
Chromosome Location	chr7:33312020-33312021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1019301	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250448	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.87[ASN][1000 genomes]
rs10269945	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10274959	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1029852	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10486525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486527	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11981364	0.89[ASN][1000 genomes]
rs11982012	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12154760	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[ASN][1000 genomes]
rs12155389	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1362370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17169807	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17169808	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17170099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170120	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170131	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170138	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170143	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170155	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170167	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170169	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170173	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170178	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170189	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17170204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[ASN][1000 genomes]
rs17170212	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17170217	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17170219	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17170232	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17170243	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.87[ASN][1000 genomes]
rs17170252	0.84[ASN][1000 genomes]
rs17170255	0.89[CEU][hapmap]
rs1833176	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1860601	1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[ASN][1000 genomes]
rs2392229	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34950347	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750122	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3828996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4538777	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628178	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744824	0.85[ASN][1000 genomes]
rs55829345	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55847945	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55865959	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924837	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55934422	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56076132	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56195645	0.82[ASN][1000 genomes]
rs56205706	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56343904	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57302264	0.93[ASN][1000 genomes]
rs58365873	0.89[ASN][1000 genomes]
rs58435944	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58550767	0.82[ASN][1000 genomes]
rs59075362	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59446325	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59497572	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59674649	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60146993	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60268357	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60491621	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60871858	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61312218	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61517720	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462469	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462474	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.89[ASN][1000 genomes]
rs6943198	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6944559	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944642	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6945490	0.80[ASN][1000 genomes]
rs6951724	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6952244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955294	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6955645	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6961060	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6962911	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964836	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6969284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975464	0.87[ASN][1000 genomes]
rs72496118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73307386	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307398	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307399	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73307400	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307592	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73309308	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309310	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309312	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73309316	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309318	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309324	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309326	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309328	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309405	0.82[ASN][1000 genomes]
rs73309423	0.82[ASN][1000 genomes]
rs73313121	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313134	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313138	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73313140	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313148	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313150	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73313177	0.89[ASN][1000 genomes]
rs73313187	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73313190	0.89[ASN][1000 genomes]
rs73313195	0.89[ASN][1000 genomes]
rs73313199	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73314906	0.80[ASN][1000 genomes]
rs73314908	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73314910	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73314915	0.85[ASN][1000 genomes]
rs73317008	0.84[ASN][1000 genomes]
rs73317017	0.84[ASN][1000 genomes]
rs73317492	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73319406	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73319407	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73319408	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73688093	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689881	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459365	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7779777	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7781504	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7790483	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7793667	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7796922	0.82[ASN][1000 genomes]
rs7798118	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805883	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7806348	0.89[ASN][1000 genomes]
rs7808472	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809366	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809399	0.80[EUR][1000 genomes]
rs9785048	0.89[ASN][1000 genomes]
rs9791555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9791901	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283800-33316000	Weak transcription	Ovary	ovary
2	chr7:33288800-33317600	Weak transcription	Gastric	stomach
3	chr7:33290000-33316200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:33290800-33316400	Weak transcription	Aorta	Aorta
5	chr7:33291200-33316000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:33302200-33317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:33305800-33317400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:33306200-33316200	Weak transcription	Pancreas	Pancrea
9	chr7:33307600-33315000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:33308200-33316000	Weak transcription	Left Ventricle	heart
11	chr7:33308200-33316200	Weak transcription	Lung	lung
12	chr7:33308600-33316400	Weak transcription	Spleen	Spleen
13	chr7:33309400-33313000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:33309400-33316200	Weak transcription	Fetal Stomach	stomach
15	chr7:33311000-33316400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:33311200-33313800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:33311200-33317400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:33311200-33317600	Weak transcription	Psoas Muscle	Psoas
19	chr7:33311200-33325200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:33311800-33316800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:33311800-33317000	Weak transcription	Fetal Intestine Large	intestine
22	chr7:33312000-33316200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:33312000-33317800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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