Variant report

Variant	rs73317492
Chromosome Location	chr7:33208414-33208415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1019301	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10269945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029852	0.84[AMR][1000 genomes]
rs10486523	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486525	0.82[ASN][1000 genomes]
rs1362370	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16879114	0.84[EUR][1000 genomes]
rs17169807	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169808	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170099	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170104	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170105	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17170120	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170131	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170138	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170140	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17170143	0.82[ASN][1000 genomes]
rs17170155	0.82[ASN][1000 genomes]
rs17170167	0.80[ASN][1000 genomes]
rs17170169	0.80[ASN][1000 genomes]
rs17170173	0.80[ASN][1000 genomes]
rs17170178	0.80[ASN][1000 genomes]
rs1833176	0.80[ASN][1000 genomes]
rs2392229	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34950347	0.82[ASN][1000 genomes]
rs3750122	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828996	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4538777	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4628178	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55829345	0.91[EUR][1000 genomes]
rs55847945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865959	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55924837	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55934422	0.84[AMR][1000 genomes]
rs56076132	0.83[EUR][1000 genomes]
rs56195645	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56205706	0.84[AMR][1000 genomes]
rs56343904	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs58550767	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59075362	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59446325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60146993	0.84[EUR][1000 genomes]
rs60268357	0.82[ASN][1000 genomes]
rs60491621	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60871858	0.82[EUR][1000 genomes]
rs6943198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944559	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6952244	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6955645	0.84[AMR][1000 genomes]
rs6964836	0.81[EUR][1000 genomes]
rs6969284	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6973114	0.84[EUR][1000 genomes]
rs6973552	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72496118	0.84[AMR][1000 genomes]
rs73307386	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73307398	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73307399	0.83[EUR][1000 genomes]
rs73307400	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73307592	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309308	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73309310	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73309316	0.82[ASN][1000 genomes]
rs73309318	0.82[ASN][1000 genomes]
rs73309324	0.82[ASN][1000 genomes]
rs73309326	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73309328	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73309405	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309423	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313121	0.80[ASN][1000 genomes]
rs73313134	0.80[ASN][1000 genomes]
rs73313138	0.80[ASN][1000 genomes]
rs73313148	0.80[AMR][1000 genomes]
rs73319406	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73319407	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73319408	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73688093	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73689881	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7459365	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793667	0.82[ASN][1000 genomes]
rs7795704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796922	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798118	0.82[ASN][1000 genomes]
rs7799346	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7808472	0.82[ASN][1000 genomes]
rs7809235	0.84[EUR][1000 genomes]
rs7809366	0.84[EUR][1000 genomes]
rs9791555	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791901	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv933792	chr7:33169693-33216984	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33182400-33210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr7:33184800-33217200	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:33185400-33218000	Weak transcription	Brain Angular Gyrus	brain
4	chr7:33185600-33224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:33190000-33217600	Weak transcription	Left Ventricle	heart
6	chr7:33190200-33230400	Weak transcription	Gastric	stomach
7	chr7:33195200-33220200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:33196800-33217200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:33197000-33222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:33197200-33220400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:33198000-33213800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:33198400-33217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:33200200-33217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:33201200-33210000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:33202400-33219800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:33203800-33221200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:33204400-33217600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:33205200-33213800	Weak transcription	Psoas Muscle	Psoas
19	chr7:33206200-33225400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:33206400-33209000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:33206400-33213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:33206400-33217600	Weak transcription	Thymus	Thymus
23	chr7:33206400-33220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:33206400-33221200	Weak transcription	Colonic Mucosa	Colon
25	chr7:33206400-33230400	Weak transcription	Right Ventricle	heart
26	chr7:33206600-33211600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:33206600-33215000	Weak transcription	Aorta	Aorta
28	chr7:33206600-33217200	Weak transcription	Adipose Nuclei	Adipose
29	chr7:33206600-33217400	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:33206600-33217600	Weak transcription	Esophagus	oesophagus
31	chr7:33206600-33217600	Weak transcription	Ovary	ovary
32	chr7:33206600-33217600	Weak transcription	Spleen	Spleen
33	chr7:33206600-33217800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:33206600-33222600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:33206600-33230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:33206600-33232600	Weak transcription	Pancreas	Pancrea
37	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:33206800-33209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:33206800-33212000	Weak transcription	Primary T cells from cord blood	blood
40	chr7:33206800-33213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:33206800-33213400	Weak transcription	Liver	Liver
42	chr7:33206800-33222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:33206800-33230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:33207400-33211600	Weak transcription	Fetal Stomach	stomach

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