Variant report

Variant	rs59139609
Chromosome Location	chr7:33518445-33518446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10235126	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10250448	0.87[ASN][1000 genomes]
rs10262995	0.83[ASN][1000 genomes]
rs1029852	0.85[ASN][1000 genomes]
rs10486527	0.85[ASN][1000 genomes]
rs11981364	0.85[ASN][1000 genomes]
rs11982012	0.85[ASN][1000 genomes]
rs12154760	0.87[ASN][1000 genomes]
rs12155389	0.82[ASN][1000 genomes]
rs17170189	0.82[ASN][1000 genomes]
rs17170212	0.85[ASN][1000 genomes]
rs17170217	0.85[ASN][1000 genomes]
rs17170219	0.85[ASN][1000 genomes]
rs17170232	0.87[ASN][1000 genomes]
rs17170243	0.87[ASN][1000 genomes]
rs17170252	0.89[ASN][1000 genomes]
rs1860601	0.87[ASN][1000 genomes]
rs28619003	0.81[ASN][1000 genomes]
rs55744824	0.85[ASN][1000 genomes]
rs56205706	0.82[ASN][1000 genomes]
rs58365873	0.85[ASN][1000 genomes]
rs58435944	0.82[ASN][1000 genomes]
rs59497572	0.82[ASN][1000 genomes]
rs59674649	0.82[ASN][1000 genomes]
rs61312218	0.82[ASN][1000 genomes]
rs61517720	0.82[ASN][1000 genomes]
rs6462469	0.82[ASN][1000 genomes]
rs6462474	0.85[ASN][1000 genomes]
rs6944642	0.82[ASN][1000 genomes]
rs6951724	0.82[ASN][1000 genomes]
rs6955294	0.82[ASN][1000 genomes]
rs6955645	0.85[ASN][1000 genomes]
rs6961060	0.89[ASN][1000 genomes]
rs6962911	0.82[ASN][1000 genomes]
rs6975464	0.87[ASN][1000 genomes]
rs73313140	0.82[ASN][1000 genomes]
rs73313148	0.82[ASN][1000 genomes]
rs73313150	0.82[ASN][1000 genomes]
rs73313177	0.85[ASN][1000 genomes]
rs73313187	0.85[ASN][1000 genomes]
rs73313190	0.85[ASN][1000 genomes]
rs73313195	0.85[ASN][1000 genomes]
rs73313199	0.85[ASN][1000 genomes]
rs73314910	0.85[ASN][1000 genomes]
rs73314915	0.85[ASN][1000 genomes]
rs73317008	0.89[ASN][1000 genomes]
rs73317017	0.89[ASN][1000 genomes]
rs73317065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317078	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7779777	0.89[ASN][1000 genomes]
rs7790483	0.85[ASN][1000 genomes]
rs7805883	0.89[ASN][1000 genomes]
rs7806348	0.85[ASN][1000 genomes]
rs9785048	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:33516400-33530800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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