Variant report

Variant	rs6462802
Chromosome Location	chr7:38064636-38064637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12668164	0.89[ASN][1000 genomes]
rs12672796	0.89[ASN][1000 genomes]
rs1524072	0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[ASN][1000 genomes]
rs1524074	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[ASN][1000 genomes]
rs1524075	0.80[CHB][hapmap];0.91[ASN][1000 genomes]
rs17171260	0.84[ASN][1000 genomes]
rs17171266	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34247895	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34552546	0.90[ASN][1000 genomes]
rs34719447	0.91[ASN][1000 genomes]
rs55896610	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58100365	0.89[ASN][1000 genomes]
rs60403038	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6950561	0.94[EUR][1000 genomes]
rs6972913	0.86[ASN][1000 genomes]
rs7782762	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38060000-38067400	Weak transcription	HSMM	muscle
2	chr7:38064000-38066000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:38064600-38065200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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