Variant report

Variant	rs6950561
Chromosome Location	chr7:38042825-38042826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17171260	0.84[ASN][1000 genomes]
rs6462802	0.94[EUR][1000 genomes]
rs6972913	0.82[ASN][1000 genomes]
rs73124894	1.00[ASN][1000 genomes]
rs73126804	0.99[ASN][1000 genomes]
rs7776507	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38038400-38043000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:38041400-38043000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:38041600-38043400	Enhancers	HSMM	muscle
4	chr7:38041800-38043400	Enhancers	Adipose Nuclei	Adipose
5	chr7:38042000-38043000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:38042000-38043000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:38042400-38043000	Enhancers	Psoas Muscle	Psoas
8	chr7:38042400-38043200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:38042400-38046800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:38042600-38043000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:38042600-38043000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:38042600-38043000	Flanking Active TSS	HSMMtube	muscle
13	chr7:38042800-38043000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr7:38042800-38043000	Enhancers	NHDF-Ad	bronchial
15	chr7:38042800-38046600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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