Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10245130	0.89[YRI][hapmap]
rs10245751	0.89[YRI][hapmap]
rs1024690	0.89[YRI][hapmap]
rs10252423	0.86[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1029819	0.89[YRI][hapmap]
rs1029820	0.88[YRI][hapmap]
rs10953539	0.89[YRI][hapmap]
rs1156665	0.89[YRI][hapmap]
rs12705419	1.00[LWK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs13240379	0.92[AFR][1000 genomes]
rs1860535	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1988400	0.89[YRI][hapmap]
rs2011076	0.89[YRI][hapmap]
rs2068338	0.89[YRI][hapmap]
rs2068339	0.89[YRI][hapmap]
rs2215377	0.90[LWK][hapmap];0.89[YRI][hapmap]
rs2885268	0.84[AFR][1000 genomes]
rs4236584	0.89[YRI][hapmap]
rs6466171	0.89[YRI][hapmap]
rs6953594	0.83[AFR][1000 genomes]
rs7804000	0.87[ASW][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7804155	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7807057	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs7807814	0.87[CHB][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs7808132	0.89[YRI][hapmap]
rs953944	0.89[YRI][hapmap]
rs995753	0.89[YRI][hapmap]
rs996893	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:78031600-78036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:78031800-78037000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:78032000-78036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:78032000-78036600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:78032000-78036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:78035400-78044800	Weak transcription	Brain Inferior Temporal Lobe	brain

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