Variant report

Variant	rs10252423
Chromosome Location	chr7:78033133-78033134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78019426..78023197-chr7:78030740..78033755,3	K562	blood:
2	chr7:78031308..78033411-chr7:78037629..78039764,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1012405	0.83[EUR][1000 genomes]
rs10229989	0.86[AMR][1000 genomes]
rs10244093	0.86[AMR][1000 genomes]
rs10245130	0.86[ASW][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes]
rs10245751	0.89[YRI][hapmap]
rs1024690	0.86[ASW][hapmap];0.89[YRI][hapmap]
rs10259279	0.86[AMR][1000 genomes]
rs1029819	0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs1029820	0.88[YRI][hapmap];0.86[AMR][1000 genomes]
rs1029821	0.89[AMR][1000 genomes]
rs1029823	0.89[AMR][1000 genomes]
rs1029824	0.89[AMR][1000 genomes]
rs10953539	0.86[ASW][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes]
rs1156665	0.89[YRI][hapmap];0.86[AMR][1000 genomes]
rs11764199	0.86[AMR][1000 genomes]
rs12540684	0.84[AMR][1000 genomes]
rs12705419	0.86[ASW][hapmap];0.82[LWK][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13240379	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1476824	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1988400	0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs2011076	0.89[YRI][hapmap]
rs2068338	0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs2068339	0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs2191325	0.86[AMR][1000 genomes]
rs2215377	0.86[ASW][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2885268	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36110075	0.95[ASN][1000 genomes]
rs4236584	0.89[YRI][hapmap]
rs4730257	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4995005	0.92[CHD][hapmap]
rs6466171	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6466202	0.86[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6953594	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6962218	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs758711	0.81[AMR][1000 genomes]
rs7790832	0.89[AMR][1000 genomes]
rs7791883	0.83[AMR][1000 genomes]
rs7804000	0.82[YRI][hapmap]
rs7807057	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7807814	0.82[LWK][hapmap];0.82[YRI][hapmap]
rs7808132	0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs953944	0.89[YRI][hapmap];0.89[AMR][1000 genomes]
rs9641383	0.84[AMR][1000 genomes]
rs9641392	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9641393	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs995753	0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs996893	0.86[ASW][hapmap];0.89[YRI][hapmap]
rs9986736	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9986818	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78029000-78034800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:78031600-78036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:78031800-78037000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:78032000-78036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78032000-78036600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:78032000-78036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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