Variant report

Variant	rs758711
Chromosome Location	chr7:77981388-77981389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10229989	0.85[EUR][1000 genomes]
rs10244093	0.85[EUR][1000 genomes]
rs10245130	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10245751	0.81[CEU][hapmap]
rs1024690	0.95[CEU][hapmap]
rs10252423	0.81[AMR][1000 genomes]
rs10259279	0.85[EUR][1000 genomes]
rs10261582	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1029819	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1029820	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1029821	0.86[EUR][1000 genomes]
rs1029823	0.86[EUR][1000 genomes]
rs1029824	0.86[EUR][1000 genomes]
rs10953539	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1156665	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11764199	0.85[EUR][1000 genomes]
rs12540684	0.87[EUR][1000 genomes]
rs12705419	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1476824	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1988400	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2011076	0.94[CEU][hapmap]
rs2068338	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2068339	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2191323	0.85[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs2191325	0.82[EUR][1000 genomes]
rs2215377	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2885268	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4236584	1.00[CEU][hapmap]
rs4730236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466171	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6953594	0.81[AMR][1000 genomes]
rs6962218	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6965501	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6974690	0.84[ASN][1000 genomes]
rs6977674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6978162	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728470	0.85[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs7790832	0.86[EUR][1000 genomes]
rs7791883	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7807057	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7808132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs953944	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9641383	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs976591	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs995753	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs996893	1.00[CEU][hapmap]
rs9986736	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9986818	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77964000-77981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:77975600-77992000	Weak transcription	Ovary	ovary
5	chr7:77977800-77984800	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:77978600-77982200	Enhancers	Brain Anterior Caudate	brain
7	chr7:77979000-77981600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:77979800-77982600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:77979800-77985200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:77979800-77986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:77980000-77981600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:77980000-77986400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:77980200-77981400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:77980200-77985200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:77980400-77981400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:77981000-77981600	Enhancers	Brain Substantia Nigra	brain
17	chr7:77981000-77982000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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