Variant report

Variant	rs976591
Chromosome Location	chr7:77983063-77983064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1012405	1.00[YRI][hapmap]
rs10261582	0.90[ASN][1000 genomes]
rs12705410	0.82[JPT][hapmap]
rs2191323	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs4730236	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4730257	1.00[CEU][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs6965501	0.91[ASN][1000 genomes]
rs6974690	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977674	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6978162	0.91[ASN][1000 genomes]
rs728470	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs758711	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs9641392	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs976591	CCL26	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:77975600-77992000	Weak transcription	Ovary	ovary
4	chr7:77977800-77984800	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:77979800-77985200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:77979800-77986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:77980000-77986400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:77980200-77985200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:77981600-77984800	Weak transcription	Brain Substantia Nigra	brain
10	chr7:77981600-77994400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:77982000-77990000	Weak transcription	Brain Angular Gyrus	brain
12	chr7:77982200-77984800	Weak transcription	Brain Anterior Caudate	brain
13	chr7:77982200-77986600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:77982600-77984600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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