Variant report

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10252423	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12705419	0.81[CHD][hapmap]
rs13240379	0.85[ASN][1000 genomes]
rs2068338	0.81[CHD][hapmap]
rs36110075	0.80[ASN][1000 genomes]
rs4730257	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4995005	0.86[JPT][hapmap]
rs6974690	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9641393	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs976591	1.00[MKK][hapmap]
rs996893	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9641392	YWHAG	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78010000-78024600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
4	chr7:78018800-78024400	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78019000-78026600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:78019000-78026800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:78022600-78024200	Enhancers	Brain Angular Gyrus	brain
8	chr7:78022800-78024200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:78022800-78024200	Enhancers	Brain Substantia Nigra	brain
10	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:78023600-78025600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:78023600-78025800	Enhancers	Osteobl	bone
14	chr7:78023600-78026000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:78023600-78028600	Weak transcription	Ovary	ovary
16	chr7:78023800-78024800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:78023800-78025400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:78023800-78025600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:78023800-78025800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:78023800-78026000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:78024000-78025600	Enhancers	Muscle Satellite Cultured Cells	--

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