Variant report

Variant	rs6466603
Chromosome Location	chr7:116876474-116876475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10267855	0.83[EUR][1000 genomes]
rs10267869	0.83[EUR][1000 genomes]
rs10281328	0.83[EUR][1000 genomes]
rs12690963	0.81[EUR][1000 genomes]
rs193595	0.83[EUR][1000 genomes]
rs3808193	0.83[EUR][1000 genomes]
rs3808194	0.82[EUR][1000 genomes]
rs3808195	0.83[EUR][1000 genomes]
rs3808196	0.82[EUR][1000 genomes]
rs6954357	0.81[EUR][1000 genomes]
rs7783832	0.81[EUR][1000 genomes]
rs7788285	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116859800-116878000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:116870000-116878600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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