Variant report

Variant	rs6466623
Chromosome Location	chr7:117445048-117445049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117431054..117433813-chr7:117442829..117445438,3	K562	blood:
2	chr22:32877452..32880294-chr7:117444818..117446964,2	MCF-7	breast:
3	7:115847372-115857098..7:117443609-117447668	GM12878	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000077063	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10231200	0.85[CEU][hapmap]
rs10235887	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10249282	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs10249647	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10258876	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10277715	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17140401	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs17140426	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs28626909	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28744472	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35280089	0.82[EUR][1000 genomes]
rs6946763	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6954037	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6962570	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6971495	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6977929	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7781185	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7781470	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs9969206	0.84[CEU][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117428400-117448600	Weak transcription	Fetal Kidney	kidney
3	chr7:117431800-117447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
5	chr7:117432400-117447600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:117432400-117447800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:117432600-117446000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:117432600-117446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:117432600-117447600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:117432600-117447800	Weak transcription	Fetal Lung	lung
11	chr7:117432600-117448800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:117432800-117445200	Weak transcription	Fetal Brain Female	brain
13	chr7:117432800-117446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:117432800-117447600	Weak transcription	Adipose Nuclei	Adipose
15	chr7:117432800-117448200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
17	chr7:117433800-117447800	Weak transcription	Esophagus	oesophagus
18	chr7:117434200-117447000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:117434800-117445400	Weak transcription	Brain Anterior Caudate	brain
20	chr7:117434800-117447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:117437400-117445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:117437600-117447800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:117440400-117445200	Weak transcription	Brain Substantia Nigra	brain
25	chr7:117441000-117445400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:117441600-117445400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:117441600-117447200	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:117443400-117447600	Weak transcription	Fetal Brain Male	brain
29	chr7:117443400-117447800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:117443800-117447800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:117444000-117448400	Weak transcription	NHLF	lung
32	chr7:117444400-117447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:117444400-117451600	Enhancers	Fetal Heart	heart
34	chr7:117444600-117446600	Enhancers	Brain Angular Gyrus	brain
35	chr7:117445000-117445400	Weak transcription	Pancreas	Pancrea
36	chr7:117445000-117450800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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