Variant report

Variant	rs6466941
Chromosome Location	chr7:79710052-79710053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10239028	0.83[ASN][1000 genomes]
rs10486922	0.83[ASN][1000 genomes]
rs1074944	0.83[ASN][1000 genomes]
rs11770145	0.80[ASN][1000 genomes]
rs17804483	0.91[EUR][1000 genomes]
rs2007845	0.83[ASN][1000 genomes]
rs4731190	0.83[ASN][1000 genomes]
rs4731198	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6960044	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963566	0.85[ASN][1000 genomes]
rs6966238	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6966542	0.83[ASN][1000 genomes]
rs7778809	0.80[ASN][1000 genomes]
rs7799547	0.81[ASN][1000 genomes]
rs886364	0.91[CHB][hapmap]
rs970112	0.83[ASN][1000 genomes]
rs970113	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:79708000-79711600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:79708200-79711400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:79708400-79710400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:79708400-79711200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:79708400-79711400	Weak transcription	HUVEC	blood vessel
8	chr7:79708400-79716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:79708400-79716800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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