Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10239028	0.84[ASN][1000 genomes]
rs10271308	0.81[ASN][1000 genomes]
rs10275775	0.81[ASN][1000 genomes]
rs10486922	0.84[ASN][1000 genomes]
rs1074944	0.85[ASN][1000 genomes]
rs11770145	0.82[ASN][1000 genomes]
rs17804483	0.88[EUR][1000 genomes]
rs2007845	0.85[ASN][1000 genomes]
rs4731190	0.84[ASN][1000 genomes]
rs4731198	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466926	0.80[ASN][1000 genomes]
rs6466941	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6954322	0.81[ASN][1000 genomes]
rs6963566	0.87[ASN][1000 genomes]
rs6966238	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6966542	0.85[ASN][1000 genomes]
rs7778809	0.82[ASN][1000 genomes]
rs7799547	0.82[ASN][1000 genomes]
rs886364	0.91[CHB][hapmap]
rs970112	0.85[ASN][1000 genomes]
rs970113	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:79708400-79716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:79708400-79716800	Weak transcription	NHEK	skin
5	chr7:79712200-79716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:79714800-79717200	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:79715000-79716400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:79715200-79716600	Weak transcription	Brain Cingulate Gyrus	brain

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