Variant report

Variant	rs6468008
Chromosome Location	chr7:84644346-84644347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10253019	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12707698	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17159577	0.90[ASN][1000 genomes]
rs2158726	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2372504	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2372508	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6948339	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780132	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7796898	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs782894	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84632600-84644400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:84634200-84654000	Weak transcription	Fetal Kidney	kidney
3	chr7:84640600-84645200	Weak transcription	Fetal Heart	heart
4	chr7:84641600-84645000	Weak transcription	Pancreas	Pancrea
5	chr7:84643000-84644800	Strong transcription	Fetal Lung	lung
6	chr7:84643000-84654000	Weak transcription	HUVEC	blood vessel
7	chr7:84643400-84644600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:84643400-84647000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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