Variant report

Variant	rs7796898
Chromosome Location	chr7:84593194-84593195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10253019	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12707698	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs1594395	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs17159577	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1864527	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs2158726	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2372504	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2372508	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4623352	0.82[YRI][hapmap]
rs4728568	0.83[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs4732590	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs4732591	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs4732592	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6468008	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6948339	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7780132	0.87[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs782894	0.82[AMR][1000 genomes]
rs9649676	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv1032638	chr7:84550206-84603392	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84592400-84593200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:84592400-84593200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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