Variant report

Variant	rs6468257
Chromosome Location	chr8:34321557-34321558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:34320589..34321589-chr8:87526521..87527178,2	HCT-116	colon:
2	chr8:34321069..34321569-chr8:87526445..87527042,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176623	Chromatin interaction
ENSG00000085719	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10089816	0.91[EUR][1000 genomes]
rs10100684	0.91[EUR][1000 genomes]
rs10101147	0.87[EUR][1000 genomes]
rs10110278	0.83[EUR][1000 genomes]
rs10112924	0.88[EUR][1000 genomes]
rs1014493	0.85[EUR][1000 genomes]
rs10447956	0.86[EUR][1000 genomes]
rs11990673	0.87[EUR][1000 genomes]
rs12541738	0.86[EUR][1000 genomes]
rs13264902	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13272790	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13277369	0.86[EUR][1000 genomes]
rs13280754	0.87[EUR][1000 genomes]
rs1348640	0.82[EUR][1000 genomes]
rs1373803	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1445182	0.85[EUR][1000 genomes]
rs1445183	0.85[EUR][1000 genomes]
rs1458909	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1458910	0.85[EUR][1000 genomes]
rs1562182	0.85[EUR][1000 genomes]
rs1978999	0.86[EUR][1000 genomes]
rs1979298	0.86[EUR][1000 genomes]
rs2120917	0.85[EUR][1000 genomes]
rs2120919	0.86[EUR][1000 genomes]
rs2590455	0.85[EUR][1000 genomes]
rs2590457	0.85[EUR][1000 genomes]
rs2590459	0.85[EUR][1000 genomes]
rs2590460	0.85[EUR][1000 genomes]
rs2609592	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2609604	0.85[EUR][1000 genomes]
rs2609605	0.85[EUR][1000 genomes]
rs2609613	0.85[EUR][1000 genomes]
rs2719287	0.86[EUR][1000 genomes]
rs2719298	0.80[EUR][1000 genomes]
rs2719317	0.85[EUR][1000 genomes]
rs28521494	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4308727	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4322005	0.87[EUR][1000 genomes]
rs4475478	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4475479	0.87[EUR][1000 genomes]
rs4739566	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468255	0.89[EUR][1000 genomes]
rs6468256	0.90[EUR][1000 genomes]
rs6985772	0.88[EUR][1000 genomes]
rs6986938	0.88[EUR][1000 genomes]
rs6988429	0.87[EUR][1000 genomes]
rs6988737	0.87[EUR][1000 genomes]
rs7011041	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7812560	0.87[EUR][1000 genomes]
rs7822096	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7823416	0.95[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7841483	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7842180	0.87[EUR][1000 genomes]
rs7843364	0.87[EUR][1000 genomes]
rs958085	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6147	chr8:34314029-34359124	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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