Variant report

Variant	rs6468320
Chromosome Location	chr8:35424080-35424081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10086532	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10099855	0.86[ASN][1000 genomes]
rs10102863	0.85[ASN][1000 genomes]
rs10106901	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10111986	0.82[ASN][1000 genomes]
rs10112860	0.85[ASN][1000 genomes]
rs10216851	0.85[ASN][1000 genomes]
rs12334629	0.85[ASN][1000 genomes]
rs12334687	0.91[ASN][1000 genomes]
rs12541423	0.94[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12543657	0.86[ASN][1000 genomes]
rs12544168	0.95[ASN][1000 genomes]
rs12544701	0.85[ASN][1000 genomes]
rs12546560	0.88[ASN][1000 genomes]
rs12546786	0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs12547584	0.88[ASN][1000 genomes]
rs12550037	0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs13250198	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1371154	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1439157	0.80[CHB][hapmap]
rs1439159	0.88[ASN][1000 genomes]
rs16884041	0.82[ASN][1000 genomes]
rs16884099	0.95[ASN][1000 genomes]
rs16884109	0.88[ASN][1000 genomes]
rs1992251	0.88[ASN][1000 genomes]
rs1992252	0.88[ASN][1000 genomes]
rs2053340	0.95[ASN][1000 genomes]
rs28748085	0.97[ASN][1000 genomes]
rs35827990	0.86[ASN][1000 genomes]
rs3899662	0.97[ASN][1000 genomes]
rs41360948	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs41409549	0.86[ASN][1000 genomes]
rs4302835	0.93[ASN][1000 genomes]
rs4739306	0.88[ASN][1000 genomes]
rs4739412	0.82[ASN][1000 genomes]
rs4739414	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4739415	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4739416	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56276341	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58417870	0.95[ASN][1000 genomes]
rs59091238	0.83[ASN][1000 genomes]
rs6980691	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6988474	0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6989128	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6990731	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6990960	0.82[ASN][1000 genomes]
rs6991528	0.85[ASN][1000 genomes]
rs6992105	0.93[ASN][1000 genomes]
rs6995309	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6997313	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7001739	0.82[ASN][1000 genomes]
rs7002810	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs7002972	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs7011885	0.93[ASN][1000 genomes]
rs7016526	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73571880	0.82[ASN][1000 genomes]
rs73674023	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7818666	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7821725	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7829642	0.95[ASN][1000 genomes]
rs7833005	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7833633	0.95[ASN][1000 genomes]
rs7834535	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7841785	0.95[ASN][1000 genomes]
rs7845667	0.88[ASN][1000 genomes]
rs9772421	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9773948	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs983270	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs983271	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs983272	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs983273	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs997084	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35414800-35424200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:35415000-35431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:35419000-35430200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:35419000-35439400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:35419000-35439600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:35419200-35427600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:35423200-35424200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:35423600-35432600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:35423800-35439400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:35423800-35439600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:35424000-35424200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:35424000-35427800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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