Variant report

Variant	rs6468783
Chromosome Location	chr8:102681760-102681761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102679834..102682568-chr8:103211962..103214498,2	MCF-7	breast:
2	chr8:102672754..102675270-chr8:102680844..102682730,2	MCF-7	breast:
3	chr8:102676339..102678674-chr8:102680968..102682901,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1131862	1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1131863	1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs16868114	1.00[MEX][hapmap];0.81[MKK][hapmap]
rs16868172	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868177	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734583	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4734586	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4734589	1.00[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs6468788	1.00[CEU][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs6990400	0.81[YRI][hapmap]
rs7003410	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7841416	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
2	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
3	chr8:102672800-102682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102676200-102682200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102676600-102682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:102678800-102683800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:102679000-102682600	Weak transcription	Lung	lung
8	chr8:102679400-102681800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:102679800-102683200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr8:102679800-102683800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr8:102680000-102681800	Weak transcription	HMEC	breast
12	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:102680200-102682600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:102680200-102683400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:102680400-102682200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:102680400-102682400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:102680400-102682600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:102680600-102682400	Weak transcription	Placenta	Placenta
19	chr8:102680600-102683400	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr8:102680800-102682800	Enhancers	Fetal Lung	lung
21	chr8:102680800-102683000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:102681000-102681800	Weak transcription	Esophagus	oesophagus
23	chr8:102681200-102682400	Weak transcription	Gastric	stomach
24	chr8:102681200-102682600	Weak transcription	Fetal Intestine Large	intestine
25	chr8:102681200-102682800	Strong transcription	Pancreas	Pancrea
26	chr8:102681200-102683200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:102681400-102682000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:102681400-102682200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:102681400-102682200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:102681400-102682400	Weak transcription	Fetal Muscle Leg	muscle

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