Variant report

Variant	rs4734586
Chromosome Location	chr8:102713927-102713928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102703417..102705716-chr8:102712935..102714769,2	MCF-7	breast:
2	chr8:102704561..102708348-chr8:102712896..102716376,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10081547	0.93[ASN][1000 genomes]
rs10808376	0.92[ASN][1000 genomes]
rs16868172	0.94[EUR][1000 genomes]
rs16868177	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4734583	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4734589	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6468783	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6468788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs6468790	1.00[JPT][hapmap]
rs6987350	0.81[ASN][1000 genomes]
rs7003410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812947	0.81[EUR][1000 genomes]
rs7814988	1.00[ASN][1000 genomes]
rs7841416	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
3	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
4	chr8:102705600-102715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:102712400-102714000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:102712400-102714000	Enhancers	Thymus	Thymus
8	chr8:102712400-102716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:102712600-102714000	Enhancers	Ovary	ovary
10	chr8:102712600-102714200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:102712600-102714200	Enhancers	Colon Smooth Muscle	Colon
12	chr8:102712600-102714200	Enhancers	Fetal Kidney	kidney
13	chr8:102712600-102714400	Enhancers	Primary hematopoietic stem cells	blood
14	chr8:102712600-102714800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102712600-102714800	Enhancers	Fetal Thymus	thymus
16	chr8:102712600-102714800	Enhancers	Spleen	Spleen
17	chr8:102712600-102716600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:102712800-102714000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:102712800-102714000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:102712800-102714000	Enhancers	Adipose Nuclei	Adipose
21	chr8:102712800-102714000	Flanking Active TSS	GM12878-XiMat	blood
22	chr8:102712800-102714000	Enhancers	NHDF-Ad	bronchial
23	chr8:102712800-102714600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:102713000-102714000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr8:102713000-102714000	Enhancers	Fetal Muscle Leg	muscle
26	chr8:102713000-102714200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr8:102713000-102714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:102713000-102714200	Enhancers	Duodenum Mucosa	Duodenum
29	chr8:102713000-102714400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr8:102713000-102715600	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr8:102713000-102716400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr8:102713200-102714000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:102713200-102714600	Enhancers	Primary T cells from cord blood	blood
34	chr8:102713200-102714800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr8:102713200-102715600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:102713400-102714000	Enhancers	Brain Substantia Nigra	brain
37	chr8:102713400-102714400	Enhancers	Liver	Liver
38	chr8:102713400-102714600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:102713400-102715200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:102713400-102715600	Weak transcription	Lung	lung
41	chr8:102713400-102715600	Weak transcription	Psoas Muscle	Psoas
42	chr8:102713400-102715600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:102713400-102715600	Weak transcription	Right Atrium	heart
44	chr8:102713400-102715800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:102713600-102715400	Weak transcription	Brain Hippocampus Middle	brain
46	chr8:102713600-102715400	Weak transcription	Fetal Lung	lung
47	chr8:102713600-102715600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:102713600-102715800	Weak transcription	Right Ventricle	heart
49	chr8:102713600-102716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr8:102713800-102714800	Weak transcription	Fetal Muscle Trunk	muscle

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