Variant report

Variant	rs7814988
Chromosome Location	chr8:102711431-102711432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:102711379-102711434	GM13976	blood:	n/a	n/a

Variant related genes	Relation type
NCALD	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081547	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10808376	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11778728	1.00[EUR][1000 genomes]
rs4734574	1.00[EUR][1000 genomes]
rs4734586	1.00[ASN][1000 genomes]
rs6468788	1.00[ASN][1000 genomes]
rs6468789	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468790	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987350	0.81[ASN][1000 genomes]
rs7003410	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
2	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
4	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
6	chr8:102702400-102713000	Weak transcription	Lung	lung
7	chr8:102703200-102712400	Weak transcription	Right Ventricle	heart
8	chr8:102703800-102712600	Weak transcription	Liver	Liver
9	chr8:102703800-102713000	Weak transcription	Left Ventricle	heart
10	chr8:102704200-102713200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:102704600-102712000	Weak transcription	Fetal Intestine Small	intestine
12	chr8:102704600-102712600	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:102705000-102712600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:102705600-102715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:102706000-102712600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:102706400-102712600	Weak transcription	Fetal Stomach	stomach
17	chr8:102706800-102713000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:102707200-102712600	Weak transcription	Fetal Thymus	thymus
19	chr8:102707800-102712600	Weak transcription	Ovary	ovary
20	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:102709000-102712400	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:102709000-102712400	Weak transcription	GM12878-XiMat	blood
23	chr8:102709000-102712800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:102709000-102713200	Weak transcription	Primary T cells from cord blood	blood
25	chr8:102709200-102712000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:102709200-102712600	Weak transcription	Fetal Muscle Trunk	muscle

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