Variant report

Variant	rs6469941
Chromosome Location	chr8:121664875-121664876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13268742	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464975	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7820451	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7821110	0.93[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7825018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7836771	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297623	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9772850	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:121645200-121665200	Weak transcription	Primary B cells from cord blood	blood
8	chr8:121646400-121666800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:121655400-121666400	Weak transcription	HSMM	muscle
10	chr8:121655600-121666000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:121655600-121666400	Weak transcription	HSMMtube	muscle
12	chr8:121655800-121673000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:121660800-121666400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:121662200-121668200	Strong transcription	HepG2	liver
16	chr8:121662200-121675000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:121662400-121668400	Strong transcription	Liver	Liver
18	chr8:121662400-121673400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:121662600-121665600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr8:121662800-121680000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:121663000-121681200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:121663200-121672400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:121663400-121665600	Weak transcription	Fetal Kidney	kidney
24	chr8:121663600-121669200	Weak transcription	Primary T cells from cord blood	blood
25	chr8:121663600-121685000	Weak transcription	Aorta	Aorta
26	chr8:121663800-121668600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr8:121664000-121666600	Enhancers	Fetal Lung	lung
28	chr8:121664200-121665200	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:121664200-121669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:121664200-121671800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:121664400-121665200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:121664400-121665800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:121664400-121666400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:121664400-121666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:121664400-121666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:121664400-121668000	Enhancers	NHLF	lung
37	chr8:121664400-121669600	Enhancers	NHDF-Ad	bronchial
38	chr8:121664400-121670000	Enhancers	Osteobl	bone
39	chr8:121664600-121665000	Weak transcription	Psoas Muscle	Psoas
40	chr8:121664800-121665600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr8:121664800-121665800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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