Variant report

Variant	rs9297623
Chromosome Location	chr8:121662112-121662113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13268742	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6469941	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7464975	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7820451	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7821110	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7825018	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7836771	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9772850	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121613200-121668000	Weak transcription	Pancreas	Pancrea
2	chr8:121628600-121673200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:121644200-121666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:121644800-121664400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:121644800-121664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:121644800-121674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr8:121645000-121664400	Weak transcription	NHLF	lung
8	chr8:121645000-121666400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:121645000-121673000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:121645200-121665200	Weak transcription	Primary B cells from cord blood	blood
11	chr8:121645400-121662400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:121645600-121662400	Weak transcription	Primary T cells from cord blood	blood
13	chr8:121646400-121666800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:121655200-121663200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:121655400-121666400	Weak transcription	HSMM	muscle
16	chr8:121655600-121666000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:121655600-121666400	Weak transcription	HSMMtube	muscle
18	chr8:121655800-121662200	Weak transcription	HepG2	liver
19	chr8:121655800-121664400	Weak transcription	NHDF-Ad	bronchial
20	chr8:121655800-121673000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:121656400-121662200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:121656400-121662400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:121656400-121662400	Weak transcription	Liver	Liver
24	chr8:121658000-121662400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:121658600-121678600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:121660800-121666400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:121661400-121662800	Weak transcription	Fetal Kidney	kidney
28	chr8:121661600-121664200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr8:121661600-121664400	Weak transcription	Psoas Muscle	Psoas
30	chr8:121662000-121662400	Weak transcription	Primary monocytes fromperipheralblood	blood

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