Variant report

Variant	rs6470236
Chromosome Location	chr8:125285541-125285542
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10107999	0.82[CHB][hapmap]
rs11985656	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13282297	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16899526	0.82[CHB][hapmap]
rs4870895	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470239	0.82[CHB][hapmap]
rs7016827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8181004	0.81[EUR][1000 genomes]
rs9297692	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125274800-125287400	Weak transcription	Fetal Brain Male	brain
2	chr8:125282200-125285600	Enhancers	NHDF-Ad	bronchial
3	chr8:125282800-125285600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:125283200-125285600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:125284000-125285600	Flanking Active TSS	A549	lung
6	chr8:125284400-125285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:125284400-125285800	Enhancers	Osteobl	bone
8	chr8:125284400-125286800	Weak transcription	HSMMtube	muscle
9	chr8:125284600-125290200	Weak transcription	Psoas Muscle	Psoas
10	chr8:125284800-125285800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr8:125285000-125285800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:125285000-125286200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:125285400-125286600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:125285400-125287000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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