Variant report

Variant	rs10107999
Chromosome Location	chr8:125305582-125305583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125303996..125306614-chr8:125309015..125311181,2	K562	blood:
2	chr8:125304018..125305928-chr8:125383315..125385375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10097723	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16899526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28600111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4295647	0.81[ASN][1000 genomes]
rs5006381	1.00[ASN][1000 genomes]
rs55997863	1.00[ASN][1000 genomes]
rs56274121	1.00[ASN][1000 genomes]
rs61733521	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470236	0.82[CHB][hapmap]
rs6470239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs66622109	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66726154	0.86[ASN][1000 genomes]
rs67647956	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990925	0.86[ASW][hapmap]
rs7016827	0.82[CHB][hapmap]
rs72710855	0.82[ASN][1000 genomes]
rs72710858	0.82[ASN][1000 genomes]
rs72710860	0.82[ASN][1000 genomes]
rs72710862	0.82[ASN][1000 genomes]
rs72710871	0.81[ASN][1000 genomes]
rs72711165	0.86[ASN][1000 genomes]
rs72711178	0.81[ASN][1000 genomes]
rs72711182	0.82[ASN][1000 genomes]
rs72711187	0.82[ASN][1000 genomes]
rs72711189	0.84[ASN][1000 genomes]
rs72711190	0.84[ASN][1000 genomes]
rs72711193	0.84[ASN][1000 genomes]
rs72711199	0.82[ASN][1000 genomes]
rs72711201	0.82[ASN][1000 genomes]
rs72721415	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721416	1.00[ASN][1000 genomes]
rs72721431	0.86[ASN][1000 genomes]
rs72721433	0.86[ASN][1000 genomes]
rs72721442	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125295600-125306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:125301400-125329800	Weak transcription	HSMMtube	muscle
3	chr8:125303600-125306200	Enhancers	A549	lung
4	chr8:125304400-125313600	Weak transcription	Left Ventricle	heart
5	chr8:125304600-125317800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links