Variant report

Variant	rs66726154
Chromosome Location	chr8:125343073-125343074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125337424..125341244-chr8:125341867..125344494,3	K562	blood:
2	chr8:125326091..125328342-chr8:125340650..125343149,2	MCF-7	breast:
3	chr8:125342566..125344974-chr8:125348992..125350712,2	K562	blood:
4	chr8:125338867..125341244-chr8:125341867..125344052,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10107999	0.86[ASN][1000 genomes]
rs16899526	0.86[ASN][1000 genomes]
rs17369980	0.91[ASN][1000 genomes]
rs4295647	0.95[ASN][1000 genomes]
rs5006381	0.86[ASN][1000 genomes]
rs55997863	0.86[ASN][1000 genomes]
rs56041216	0.84[ASN][1000 genomes]
rs56274121	0.86[ASN][1000 genomes]
rs61733521	0.86[ASN][1000 genomes]
rs6470239	0.98[ASN][1000 genomes]
rs66622109	0.86[ASN][1000 genomes]
rs67647956	0.86[ASN][1000 genomes]
rs72710855	0.96[ASN][1000 genomes]
rs72710858	0.96[ASN][1000 genomes]
rs72710860	0.96[ASN][1000 genomes]
rs72710862	0.96[ASN][1000 genomes]
rs72710871	0.95[ASN][1000 genomes]
rs72710872	0.91[ASN][1000 genomes]
rs72711165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711173	0.89[EUR][1000 genomes]
rs72711178	0.95[ASN][1000 genomes]
rs72711182	0.96[ASN][1000 genomes]
rs72711187	0.96[ASN][1000 genomes]
rs72711189	0.98[ASN][1000 genomes]
rs72711190	0.98[ASN][1000 genomes]
rs72711193	0.98[ASN][1000 genomes]
rs72711199	0.96[ASN][1000 genomes]
rs72711201	0.96[ASN][1000 genomes]
rs72721415	0.86[ASN][1000 genomes]
rs72721416	0.86[ASN][1000 genomes]
rs72721431	1.00[ASN][1000 genomes]
rs72721433	1.00[ASN][1000 genomes]
rs72721442	1.00[ASN][1000 genomes]
rs73332171	0.97[AFR][1000 genomes]
rs73332193	0.97[AFR][1000 genomes]
rs73333906	0.90[AFR][1000 genomes]
rs73333922	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv521356	chr8:125309055-125404763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv516190	chr8:125323011-125343441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125312600-125346000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:125332000-125352800	Weak transcription	Fetal Lung	lung
3	chr8:125332400-125351000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:125332600-125348000	Weak transcription	Primary B cells from cord blood	blood
5	chr8:125332800-125346000	Weak transcription	Hela-S3	cervix
6	chr8:125333800-125345800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:125334000-125345800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:125334000-125345800	Weak transcription	HMEC	breast
9	chr8:125334200-125364000	Weak transcription	HUVEC	blood vessel
10	chr8:125336800-125347200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:125338000-125345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:125338000-125347400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:125338400-125346000	Weak transcription	A549	lung
14	chr8:125339200-125343200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:125339200-125344400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:125339200-125347000	Weak transcription	Primary T cells from cord blood	blood
17	chr8:125339400-125344600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:125340000-125346000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr8:125343000-125343400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:125343000-125343400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links