Variant report

Variant	rs72710871
Chromosome Location	chr8:125419307-125419308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10107999	0.81[ASN][1000 genomes]
rs16899526	0.81[ASN][1000 genomes]
rs17369980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4295647	1.00[ASN][1000 genomes]
rs5006381	0.81[ASN][1000 genomes]
rs55997863	0.81[ASN][1000 genomes]
rs56041216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56274121	0.81[ASN][1000 genomes]
rs61733521	0.81[ASN][1000 genomes]
rs6470239	0.96[ASN][1000 genomes]
rs66622109	0.81[ASN][1000 genomes]
rs66726154	0.95[ASN][1000 genomes]
rs67647956	0.81[ASN][1000 genomes]
rs72710855	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72710858	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72710860	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72710862	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72710872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72710882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72710885	0.84[EUR][1000 genomes]
rs72711165	0.95[ASN][1000 genomes]
rs72711178	0.93[ASN][1000 genomes]
rs72711182	0.98[ASN][1000 genomes]
rs72711187	0.98[ASN][1000 genomes]
rs72711189	0.96[ASN][1000 genomes]
rs72711190	0.96[ASN][1000 genomes]
rs72711193	0.96[ASN][1000 genomes]
rs72711196	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72711199	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72711201	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72721415	0.81[ASN][1000 genomes]
rs72721416	0.81[ASN][1000 genomes]
rs72721431	0.95[ASN][1000 genomes]
rs72721433	0.95[ASN][1000 genomes]
rs72721442	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv527751	chr8:125338216-125431030	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125415800-125420200	Weak transcription	Fetal Heart	heart
2	chr8:125419200-125419400	Enhancers	Fetal Intestine Small	intestine
3	chr8:125419200-125420400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links