Variant report

Variant	rs6470867
Chromosome Location	chr8:131957989-131957990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1435448	0.84[EUR][1000 genomes]
rs28380300	0.85[EUR][1000 genomes]
rs55755209	0.94[EUR][1000 genomes]
rs55821750	0.84[EUR][1000 genomes]
rs55840599	0.94[EUR][1000 genomes]
rs55947871	0.94[EUR][1000 genomes]
rs56250014	0.94[EUR][1000 genomes]
rs67973976	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986535	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72712497	0.84[EUR][1000 genomes]
rs72712501	0.84[EUR][1000 genomes]
rs72712502	0.84[EUR][1000 genomes]
rs72714406	0.84[EUR][1000 genomes]
rs72714409	0.84[EUR][1000 genomes]
rs72714410	0.84[EUR][1000 genomes]
rs72714411	0.84[EUR][1000 genomes]
rs72714412	0.84[EUR][1000 genomes]
rs72714414	0.84[EUR][1000 genomes]
rs72714415	0.84[EUR][1000 genomes]
rs72714422	0.84[EUR][1000 genomes]
rs72714430	0.88[EUR][1000 genomes]
rs72714431	0.88[EUR][1000 genomes]
rs72714434	0.88[EUR][1000 genomes]
rs72714435	0.88[EUR][1000 genomes]
rs72714438	0.91[EUR][1000 genomes]
rs72714443	0.91[EUR][1000 genomes]
rs72714452	0.94[EUR][1000 genomes]
rs72714475	0.94[EUR][1000 genomes]
rs72714477	0.94[EUR][1000 genomes]
rs72714479	0.94[EUR][1000 genomes]
rs72714480	0.94[EUR][1000 genomes]
rs72714481	0.94[EUR][1000 genomes]
rs7459542	0.94[EUR][1000 genomes]
rs7461547	0.84[EUR][1000 genomes]
rs7813636	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv972586	chr8:131956217-131962907	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131945400-131958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:131948600-131960000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:131950000-131962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:131955600-131960600	Weak transcription	Brain Anterior Caudate	brain
5	chr8:131957200-131958000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:131957200-131958000	Enhancers	HMEC	breast
7	chr8:131957200-131958200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:131957400-131958400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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