Variant report

Variant	rs72714409
Chromosome Location	chr8:131887778-131887779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1435448	1.00[EUR][1000 genomes]
rs28380300	0.98[EUR][1000 genomes]
rs55755209	0.89[EUR][1000 genomes]
rs55821750	1.00[EUR][1000 genomes]
rs55840599	0.89[EUR][1000 genomes]
rs55947871	0.89[EUR][1000 genomes]
rs56250014	0.89[EUR][1000 genomes]
rs6470867	0.84[EUR][1000 genomes]
rs67973976	0.84[EUR][1000 genomes]
rs6986535	0.84[EUR][1000 genomes]
rs7001029	0.84[EUR][1000 genomes]
rs72712497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72712501	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72712502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714411	1.00[EUR][1000 genomes]
rs72714412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714422	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72714430	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72714431	0.95[EUR][1000 genomes]
rs72714434	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72714435	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72714438	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714452	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72714475	0.89[EUR][1000 genomes]
rs72714477	0.89[EUR][1000 genomes]
rs72714479	0.89[EUR][1000 genomes]
rs72714480	0.89[EUR][1000 genomes]
rs72714481	0.89[EUR][1000 genomes]
rs7459542	0.89[EUR][1000 genomes]
rs7461547	1.00[EUR][1000 genomes]
rs7813636	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612294	chr8:131645079-131923377	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831462	chr8:131704119-131895793	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv525692	chr8:131866339-131888262	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131879600-131892400	Weak transcription	NHDF-Ad	bronchial

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