Variant report

Variant	rs6470870
Chromosome Location	chr8:131969387-131969388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10090592	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10090658	0.85[ASN][1000 genomes]
rs10755934	0.93[ASN][1000 genomes]
rs10956563	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956565	0.93[ASN][1000 genomes]
rs10956566	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956567	0.87[ASN][1000 genomes]
rs11786761	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12155837	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12156272	0.85[ASN][1000 genomes]
rs12335232	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12545796	0.81[ASN][1000 genomes]
rs12550576	0.81[ASN][1000 genomes]
rs12674666	0.93[ASN][1000 genomes]
rs28491358	0.81[ASN][1000 genomes]
rs28576995	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4736463	0.93[ASN][1000 genomes]
rs4736727	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4736728	0.93[ASN][1000 genomes]
rs4736729	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4736730	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59983985	0.93[ASN][1000 genomes]
rs6415525	0.93[ASN][1000 genomes]
rs6415526	0.93[ASN][1000 genomes]
rs6415527	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6470871	0.93[ASN][1000 genomes]
rs6470872	0.93[ASN][1000 genomes]
rs6470873	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6470874	0.90[ASN][1000 genomes]
rs6470875	0.83[ASN][1000 genomes]
rs6980986	0.87[ASN][1000 genomes]
rs6986777	0.84[ASN][1000 genomes]
rs6987081	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6987249	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6987663	0.93[ASN][1000 genomes]
rs6987807	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988340	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6991107	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6997190	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6997744	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998224	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7009300	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7009319	0.93[ASN][1000 genomes]
rs7009351	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7009501	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014446	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014917	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7460718	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7461026	0.81[ASN][1000 genomes]
rs7828958	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131968800-131976200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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