Variant report

Variant	rs6415525
Chromosome Location	chr8:131966532-131966533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10090592	1.00[ASN][1000 genomes]
rs10090658	0.85[ASN][1000 genomes]
rs10755934	1.00[ASN][1000 genomes]
rs10956563	0.96[ASN][1000 genomes]
rs10956565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956566	1.00[ASN][1000 genomes]
rs10956567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11774077	1.00[JPT][hapmap]
rs11776501	1.00[AFR][1000 genomes]
rs11778603	1.00[AFR][1000 genomes]
rs11779492	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11782471	1.00[AFR][1000 genomes]
rs11784937	1.00[AFR][1000 genomes]
rs11785068	1.00[JPT][hapmap]
rs11786442	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11786761	1.00[ASN][1000 genomes]
rs11787293	1.00[AFR][1000 genomes]
rs12155837	1.00[ASN][1000 genomes]
rs12156272	0.85[ASN][1000 genomes]
rs12335232	0.93[ASN][1000 genomes]
rs12545796	0.81[ASN][1000 genomes]
rs12550576	0.81[ASN][1000 genomes]
rs12674666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677297	1.00[AFR][1000 genomes]
rs12679474	1.00[AFR][1000 genomes]
rs13249674	1.00[AFR][1000 genomes]
rs13258869	1.00[AFR][1000 genomes]
rs13261265	1.00[AFR][1000 genomes]
rs13269832	1.00[AFR][1000 genomes]
rs13276752	1.00[AFR][1000 genomes]
rs13276850	1.00[AFR][1000 genomes]
rs13281591	1.00[AFR][1000 genomes]
rs1329799	1.00[AFR][1000 genomes]
rs1329800	1.00[AFR][1000 genomes]
rs1329805	1.00[AFR][1000 genomes]
rs16904398	1.00[AFR][1000 genomes]
rs2026755	1.00[AFR][1000 genomes]
rs28491358	0.81[ASN][1000 genomes]
rs28576995	0.96[ASN][1000 genomes]
rs34359920	1.00[AFR][1000 genomes]
rs34396484	1.00[AFR][1000 genomes]
rs34620076	1.00[AFR][1000 genomes]
rs35187535	1.00[AFR][1000 genomes]
rs35687211	1.00[AFR][1000 genomes]
rs365538	1.00[JPT][hapmap]
rs4389913	1.00[AFR][1000 genomes]
rs4736463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4736464	1.00[AFR][1000 genomes]
rs4736725	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4736727	1.00[ASN][1000 genomes]
rs4736728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4736729	1.00[ASN][1000 genomes]
rs4736730	1.00[ASN][1000 genomes]
rs59232626	1.00[AFR][1000 genomes]
rs59808230	1.00[AFR][1000 genomes]
rs59983985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415527	1.00[ASN][1000 genomes]
rs6470870	0.93[ASN][1000 genomes]
rs6470871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470873	1.00[ASN][1000 genomes]
rs6470874	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470875	0.89[ASN][1000 genomes]
rs6980986	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986777	0.90[ASN][1000 genomes]
rs6987081	1.00[ASN][1000 genomes]
rs6987249	0.93[ASN][1000 genomes]
rs6987663	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987807	1.00[ASN][1000 genomes]
rs6988340	1.00[ASN][1000 genomes]
rs6991107	1.00[ASN][1000 genomes]
rs6997190	1.00[ASN][1000 genomes]
rs6997744	0.93[ASN][1000 genomes]
rs6998224	0.93[ASN][1000 genomes]
rs7009300	1.00[ASN][1000 genomes]
rs7009319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009351	1.00[ASN][1000 genomes]
rs7009501	1.00[ASN][1000 genomes]
rs7014446	1.00[ASN][1000 genomes]
rs7014917	1.00[ASN][1000 genomes]
rs71522600	1.00[AFR][1000 genomes]
rs71522601	1.00[AFR][1000 genomes]
rs71522602	1.00[AFR][1000 genomes]
rs71524503	1.00[AFR][1000 genomes]
rs71524504	1.00[AFR][1000 genomes]
rs7460718	1.00[ASN][1000 genomes]
rs7461026	0.81[ASN][1000 genomes]
rs7465434	1.00[AFR][1000 genomes]
rs7828958	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131961400-131968400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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