Variant report

Variant	rs4736725
Chromosome Location	chr8:131961202-131961203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10956565	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10956567	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12674666	0.94[EUR][1000 genomes]
rs4736463	0.94[EUR][1000 genomes]
rs4736728	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59983985	0.94[EUR][1000 genomes]
rs6415525	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6415526	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6470871	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6470872	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6470874	0.94[EUR][1000 genomes]
rs6980986	0.94[EUR][1000 genomes]
rs6987663	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7009319	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7815277	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv972586	chr8:131956217-131962907	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131950000-131962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:131960600-131961400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
3	chr8:131960800-131961400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:131960800-131961400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:131960800-131961600	Active TSS	Fetal Brain Female	brain
6	chr8:131960800-131961600	Active TSS	HSMMtube	muscle
7	chr8:131961000-131961400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:131961000-131961400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:131961000-131961400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
10	chr8:131961000-131961400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
11	chr8:131961000-131961400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:131961000-131961400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:131961000-131961400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:131961000-131961400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:131961000-131961400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr8:131961000-131961400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:131961000-131961400	Active TSS	Right Ventricle	heart
18	chr8:131961000-131961400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
19	chr8:131961000-131961400	Active TSS	HSMM	muscle
20	chr8:131961000-131961400	Active TSS	NH-A	brain
21	chr8:131961000-131961600	Active TSS	Right Atrium	heart
22	chr8:131961200-131961400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:131961200-131961400	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr8:131961200-131961600	Enhancers	Fetal Brain Male	brain

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