Variant report

Variant	rs7815277
Chromosome Location	chr8:131960656-131960657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11774077	1.00[JPT][hapmap]
rs11779492	1.00[JPT][hapmap]
rs11785068	1.00[JPT][hapmap]
rs11786442	1.00[JPT][hapmap]
rs365538	1.00[JPT][hapmap]
rs4736725	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891448	chr8:131668278-131968469	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034107	chr8:131740146-131985765	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539747	chr8:131740146-131985765	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv972586	chr8:131956217-131962907	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7815277	SCGB1D2	trans	brain	seeQTL
rs7815277	SCGB2A2	trans	brain	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131950000-131962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:131960000-131960800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:131960000-131960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:131960000-131961200	Enhancers	HMEC	breast
5	chr8:131960200-131961000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:131960400-131961000	Enhancers	HSMM	muscle
7	chr8:131960600-131960800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:131960600-131960800	Enhancers	Brain Anterior Caudate	brain
9	chr8:131960600-131960800	Flanking Active TSS	HSMMtube	muscle
10	chr8:131960600-131961000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr8:131960600-131961000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:131960600-131961000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:131960600-131961000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr8:131960600-131961000	Enhancers	NH-A	brain
15	chr8:131960600-131961200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
16	chr8:131960600-131961200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr8:131960600-131961400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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