Variant report

Variant	rs6471626
Chromosome Location	chr8:58476028-58476029
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12677701	0.82[EUR][1000 genomes]
rs1451137	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1542270	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2053897	0.88[ASN][1000 genomes]
rs6471628	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6984003	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1032984	chr8:58406263-58548970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1018076	chr8:58408947-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv611409	chr8:58438221-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv611410	chr8:58452850-58536334	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58453000-58476400	Weak transcription	HSMMtube	muscle
2	chr8:58464400-58477000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:58469600-58476200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:58472600-58476800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:58472800-58476600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:58473000-58477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:58473600-58476800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:58473800-58476800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:58474000-58476400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:58474000-58476600	Weak transcription	NHDF-Ad	bronchial
11	chr8:58474000-58477000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:58474000-58477200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:58474200-58476400	Weak transcription	NHEK	skin
14	chr8:58474200-58476400	Weak transcription	Osteobl	bone
15	chr8:58474200-58476600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:58474400-58476400	Weak transcription	NH-A	brain
17	chr8:58474400-58476600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:58474400-58477200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:58474600-58476400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:58474600-58477200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:58474800-58476400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:58475200-58476400	Weak transcription	HSMM	muscle
23	chr8:58475800-58476400	Enhancers	A549	lung
24	chr8:58476000-58478400	Enhancers	HepG2	liver

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