Variant report

Variant	rs6471853
Chromosome Location	chr8:61160657-61160658
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61156748..61160814-chr8:61163717..61166857,4	MCF-7	breast:
2	chr8:61160422..61162157-chr8:61192426..61195371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178538	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10086200	0.83[ASN][1000 genomes]
rs10086352	0.81[ASN][1000 genomes]
rs10086449	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10093008	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10094523	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10094553	0.81[AMR][1000 genomes]
rs10097537	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10109265	0.82[ASN][1000 genomes]
rs10109487	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10435600	0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10957125	0.83[ASN][1000 genomes]
rs11774698	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11774872	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11778498	0.81[ASN][1000 genomes]
rs11781514	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13266513	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13267008	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13269899	0.83[ASN][1000 genomes]
rs13274525	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs13280153	0.82[ASN][1000 genomes]
rs13281067	0.82[ASN][1000 genomes]
rs28371059	0.83[ASN][1000 genomes]
rs28376554	0.83[ASN][1000 genomes]
rs28429093	0.83[ASN][1000 genomes]
rs28481384	0.83[ASN][1000 genomes]
rs28532174	0.83[ASN][1000 genomes]
rs28759336	0.83[ASN][1000 genomes]
rs6471851	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471852	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471855	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471856	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471857	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471858	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471859	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983830	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6987786	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988169	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990370	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6991411	0.88[CEU][hapmap]
rs6998008	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6998745	0.86[JPT][hapmap]
rs7002077	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7002369	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7003287	0.82[ASN][1000 genomes]
rs7007157	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009181	0.85[CEU][hapmap]
rs7009243	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009482	0.82[ASN][1000 genomes]
rs7463930	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7463939	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7464181	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7812953	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7813325	0.82[ASN][1000 genomes]
rs7814086	0.83[AMR][1000 genomes]
rs7814280	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814473	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826329	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832419	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7840279	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7841372	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7841804	0.83[ASN][1000 genomes]
rs7843385	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7845524	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9298027	0.81[AMR][1000 genomes]
rs9643367	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643368	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1022752	chr8:61095248-61322302	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv831333	chr8:61102862-61275122	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv890943	chr8:61134995-61225652	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv831334	chr8:61148796-61330190	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61117800-61167400	Weak transcription	Fetal Stomach	stomach
2	chr8:61151600-61161600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:61152000-61160800	Weak transcription	K562	blood
4	chr8:61156200-61160800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:61156400-61161400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:61158600-61166200	Weak transcription	Gastric	stomach
7	chr8:61158600-61174600	Weak transcription	Fetal Intestine Large	intestine
8	chr8:61158800-61176800	Weak transcription	A549	lung
9	chr8:61159200-61166800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links