Variant report

Variant	rs9298027
Chromosome Location	chr8:61153560-61153561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61151270..61153904-chr8:61181320..61183872,2	K562	blood:
2	chr8:61149598..61151950-chr8:61152260..61155123,2	K562	blood:
3	chr8:61153089..61155024-chr8:61191912..61193878,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10088581	0.83[CHB][hapmap]
rs10089297	0.87[CHB][hapmap]
rs10094224	0.82[CHB][hapmap]
rs10094326	0.83[ASN][1000 genomes]
rs10094553	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100017	0.83[CHB][hapmap]
rs10109065	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10957124	0.92[ASN][1000 genomes]
rs1480340	0.83[CHB][hapmap]
rs28643410	0.83[ASN][1000 genomes]
rs35524626	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56227154	0.98[ASN][1000 genomes]
rs6471852	0.80[EUR][1000 genomes]
rs6471853	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs6983247	0.83[CHB][hapmap]
rs6988169	0.80[EUR][1000 genomes]
rs6991411	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996114	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6998008	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007157	0.81[EUR][1000 genomes]
rs7009181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465560	0.81[ASN][1000 genomes]
rs7814086	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814280	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7814473	0.80[EUR][1000 genomes]
rs7815042	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832414	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298031	0.83[CHB][hapmap]
rs9298033	0.82[CHB][hapmap]
rs9643367	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9643368	0.86[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1022752	chr8:61095248-61322302	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv831333	chr8:61102862-61275122	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv890943	chr8:61134995-61225652	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv831334	chr8:61148796-61330190	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61117800-61167400	Weak transcription	Fetal Stomach	stomach
2	chr8:61120600-61158200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:61150200-61156200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:61150200-61156800	Weak transcription	Gastric	stomach
5	chr8:61151400-61158200	Weak transcription	A549	lung
6	chr8:61151600-61158200	Weak transcription	Fetal Intestine Large	intestine
7	chr8:61151600-61161600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:61151800-61154400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:61151800-61155000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:61152000-61155000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:61152000-61160800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links