Variant report

Variant	rs6471920
Chromosome Location	chr8:62007962-62007963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61935326..61936927-chr8:62007564..62009390,8	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10086280	0.87[ASN][1000 genomes]
rs10090495	0.96[ASN][1000 genomes]
rs10095535	0.96[ASN][1000 genomes]
rs10098638	0.85[ASN][1000 genomes]
rs10108877	0.94[ASN][1000 genomes]
rs1019902	0.96[ASN][1000 genomes]
rs3864668	0.87[ASN][1000 genomes]
rs55780478	0.96[ASN][1000 genomes]
rs6471923	0.96[ASN][1000 genomes]
rs7002787	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465697	chr8:61963699-62025948	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv611425	chr8:61963699-62025948	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61998600-62008000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:62006400-62008000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:62006400-62008200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:62006400-62008200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:62006400-62008400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:62006600-62008400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:62006800-62008200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:62006800-62008800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:62007000-62008000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:62007000-62008200	Weak transcription	Brain Germinal Matrix	brain
11	chr8:62007000-62008400	Weak transcription	Brain Substantia Nigra	brain
12	chr8:62007200-62008200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:62007200-62008400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:62007200-62008400	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:62007400-62011200	Weak transcription	Esophagus	oesophagus
16	chr8:62007600-62008200	Enhancers	Primary B cells from cord blood	blood
17	chr8:62007600-62008400	Enhancers	Primary T cells from cord blood	blood
18	chr8:62007800-62008400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:62007800-62008400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:62007800-62008400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:62007800-62008400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr8:62007800-62008400	Enhancers	Fetal Thymus	thymus
23	chr8:62007800-62008600	Flanking Active TSS	GM12878-XiMat	blood
24	chr8:62007800-62008800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:62007800-62008800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr8:62007800-62008800	Enhancers	Placenta	Placenta

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