Variant report

Variant	rs7002787
Chromosome Location	chr8:62035032-62035033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10086280	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090495	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095535	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10098638	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10108877	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1019902	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3864668	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780478	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471920	0.87[ASN][1000 genomes]
rs6471923	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv397049	chr8:62034331-62035128	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3433061	chr8:62034648-62036946	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62034000-62035200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:62034000-62037000	Enhancers	GM12878-XiMat	blood
3	chr8:62034200-62035600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:62034400-62035400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:62034400-62051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:62035000-62035200	Enhancers	HepG2	liver
7	chr8:62035000-62035400	Enhancers	Fetal Brain Male	brain
8	chr8:62035000-62036200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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