Variant report

Variant	rs6473910
Chromosome Location	chr8:55028347-55028348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:55012818..55014822-chr8:55028149..55031655,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120992	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10093431	0.82[AMR][1000 genomes]
rs10096376	0.82[AMR][1000 genomes]
rs10099080	0.82[AMR][1000 genomes]
rs10101289	0.82[AMR][1000 genomes]
rs10102439	0.82[AMR][1000 genomes]
rs1044604	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1112697	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1112698	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986605	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988830	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11988859	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11993180	0.86[AMR][1000 genomes]
rs11994366	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11998000	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11998659	0.82[AMR][1000 genomes]
rs12115094	1.00[EUR][1000 genomes]
rs16919750	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16919924	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28369337	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28379732	0.82[AMR][1000 genomes]
rs28397021	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28413072	0.82[AMR][1000 genomes]
rs28507589	0.82[AMR][1000 genomes]
rs28533970	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28736685	0.82[AMR][1000 genomes]
rs28759114	0.82[AMR][1000 genomes]
rs55704212	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55781183	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55864901	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56087054	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57093383	0.86[AMR][1000 genomes]
rs58515879	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59087284	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59114404	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59270026	1.00[EUR][1000 genomes]
rs59277432	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59387379	0.82[AMR][1000 genomes]
rs60186893	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60672236	0.80[EUR][1000 genomes]
rs60805450	0.82[AMR][1000 genomes]
rs6473899	0.82[AMR][1000 genomes]
rs6473901	0.86[AMR][1000 genomes]
rs6473902	0.86[AMR][1000 genomes]
rs6473903	0.86[AMR][1000 genomes]
rs6473905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473906	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473907	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473908	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6981386	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983650	0.86[AMR][1000 genomes]
rs6983958	0.82[AMR][1000 genomes]
rs6984119	0.86[AMR][1000 genomes]
rs6989211	0.82[AMR][1000 genomes]
rs6992073	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001391	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003793	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7005653	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7007028	0.82[AMR][1000 genomes]
rs7007031	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7007176	0.82[AMR][1000 genomes]
rs7008593	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7011032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016108	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7018355	0.82[AMR][1000 genomes]
rs73589273	0.82[AMR][1000 genomes]
rs73589286	0.82[AMR][1000 genomes]
rs73589295	0.82[AMR][1000 genomes]
rs73679588	0.86[AMR][1000 genomes]
rs73679589	0.86[AMR][1000 genomes]
rs73679596	0.86[AMR][1000 genomes]
rs73679602	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73681304	0.87[EUR][1000 genomes]
rs73681305	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73681307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73681308	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73681309	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73681805	0.86[AMR][1000 genomes]
rs73681806	0.86[AMR][1000 genomes]
rs7815998	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822750	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7823234	0.86[AMR][1000 genomes]
rs7824355	0.82[AMR][1000 genomes]
rs7824979	0.86[AMR][1000 genomes]
rs7833336	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834757	0.82[AMR][1000 genomes]
rs7836760	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839276	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844291	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844299	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7846650	0.82[AMR][1000 genomes]
rs9771960	0.82[AMR][1000 genomes]
rs9918912	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1026869	chr8:54989732-55089360	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv890921	chr8:54991447-55043802	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv890923	chr8:54994759-55049255	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv890924	chr8:54994759-55052148	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv890925	chr8:55005489-55052148	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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